Ictalurus punctatus (channel catfish): 108276797
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Entry
108276797 CDS
T04658
Name
(RefSeq) MHC class II transactivator isoform X4
KO
K08060
MHC class II transactivator [EC:
2.7.11.1
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
ipu01001
]
108276797
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
ipu04054
]
108276797
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
108276797
Protein kinases [BR:
ipu01001
]
Serine/threonine kinases: Other
TAF1 family
108276797
Pattern recognition receptors [BR:
ipu04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
108276797
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NACHT
LRR_6
NLRC4_HD2
LRR_4
LRR_8
AAA_25
nSTAND3
AAA_16
Motif
Other DBs
NCBI-GeneID:
108276797
NCBI-ProteinID:
XP_017344287
Ensembl:
ENSIPUG00000014213
UniProt:
A0A2D0SNK5
LinkDB
All DBs
Position
2:19721088..19743727
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AA seq
1069 aa
AA seq
DB search
MLLQCKMEARSETEPEDIMTSVDHGETMPDRLLDMIVSAPLEEFPFEEFLDSSYSDEVWD
DIPDGSDEKSTLVYGVCSEISSPTEIPTKKRRVCERAPKKTPRAKRSKRAPKSSETPPEV
NMAVQEGDFHVTGVSSLVRFPLTIATTASLMPSGAPAMQIIQTFNPLSPPVIKGILPVRH
TYVLVSPQSLAPVPMPQIAPLSPVDGTVAPLELSMSIHPVSSLSDSASRGQSPSQLAPVS
PSKDKSPSKEYLSTTQQIKKMPVIPKNVQDFIECLKLHLQKTCSMMQGGMSMESHYIDTP
LVQRKLIIRTGKNANKCLEKELVVLSDSERKKATMHRSHVFQNYGSNSKQLITVLGKAGM
GKSTFIQRLALDWSTGGLQQFQFIFLLNCKILNLTQASYSLKSLLFDSSMFPQCEDSEAI
FKHVLAFPENVLIVFDSFDDMKDLEGLLQSTATSATDGDYSIRQLFSGLFQKKILSGCTL
LIATRPKDVLNQLLRKVDSILELCCFSPKDIEMYVSNYFGDTSEKENALRTITSQKYIFN
LCSNPLLCRLTCFLSEHQKSNGLPSTLTDLYQRVLSQHLELNDNLQGSDKDIVQLCNVAW
DGFKMQSSLLNQNQNKNLVDYGLNSGILTTRTRYEEPGNKQVTYFANLFVQNLLTALLLV
HSNEMNDKTLLGQTALHQRKRKSPGEWQDVLQRFVMGLLFQKNTPPCFRVFQSSTDLQAK
RKAVEVHLENLKPGELIPSRLLELFHCVYEARNVKLAKLLVKNLPDNLSFCGAQLSPVDV
YVVWHLLLNTKGLKRTFSIDLRDTCVPLSGLKELVALDCVASFRAPTMDAINLWEDLHHS
NDELSLKNAIDKFTINPLKVSQVSHVENLLVLVQIHNEKKLPLCEAEPALEDGVPAVRHL
HKLEYELGQQNSPEVFLRQAEVLSALQSLHHLDLENNKMGDAEAEQLAGVLSSLSSLKLL
NLSQNCIGDAGVQKLSEALPSASSLQSLSLYGNVIGDSGAESLASVLPLMTSLLDLDVKY
NKFTDIGAKKLSAALKKSPSVKSLQMWNDCVPYGVFEHLQLQDCRIKAL
NT seq
3210 nt
NT seq
+upstream
nt +downstream
nt
atgcttttgcagtgtaaaatggaggcgcgctccgaaacagaacctgaagacatcatgacc
agtgtggatcatggggaaaccatgcctgatcgtctattggacatgatcgtctctgcgcca
cttgaagaatttccatttgaagaatttctcgattcaagttactcagatgaggtctgggac
gatatcccagatggatcagatgaaaaatccacactggtttatggggtatgcagtgagatt
tcatctccgacggaaataccaaccaagaagcgtcgagtgtgtgaaagggcaccgaagaaa
acacctcgcgctaaacgcagtaaaagagcccccaagagctctgaaacgccccctgaagtc
aacatggctgtgcaggaaggggatttccacgtcactggcgtgtcctcgcttgtacgcttc
cccttaacgatcgccactaccgcctctctgatgccatctggtgcaccagcaatgcagatc
atacaaacattcaaccccctttctcctccagtgattaaaggcattctgccggtacggcac
acctatgtgctggtttcaccacaatctctagctccagtgccaatgccacagattgcccct
ttgtcacctgttgatggtacagtggctcctttagagctcagcatgtccattcatcccgta
agctcattatcggacagcgcaagtaggggtcagtctccatcccaactagctcctgtttca
ccctcaaaagacaaatcaccctccaaagagtatctttctacaacccagcaaatcaagaag
atgccagtgataccaaagaatgttcaagacttcattgagtgcttgaagttacacctacaa
aaaacgtgtagtatgatgcaaggaggaatgagcatggagtctcactacatagacacacca
ctggtgcaaaggaagcttatcatcagaactggcaaaaatgcaaacaaatgcttagagaag
gaacttgtggtgctcagtgattcagagcgaaagaaagccacgatgcacaggagccatgtt
ttccaaaactatggatccaatagcaagcaactgatcacagtccttgggaaagccggcatg
ggaaaaagcacatttatccagcgtttggccttggactggtccaccggtggccttcagcag
ttccaattcatctttttgctgaattgcaaaattctcaatctgactcaggcgagctatagt
ctgaagagtttgctgtttgactcatccatgtttcctcagtgtgaggattcagaggccatc
ttcaaacacgttctcgcctttccagagaacgttctcattgtttttgacagtttcgatgac
atgaaagaccttgaaggtcttcttcaatccaccgctacctcagccacggatggcgactac
agtatccggcagctcttttctggtttgttccagaaaaagattctgtcagggtgcacactt
ttgattgccacccgacccaaagatgtcttaaaccagctgctgcggaaagtagacagtatc
ttggagttatgttgcttttctccaaaggacatagaaatgtatgtctcaaactattttggg
gatacatcagagaaagagaatgcactgagaacaataacaagccaaaaatatattttcaac
ttatgctcgaaccctttgctatgtcgccttacgtgctttttgtcagagcatcaaaaaagc
aatggtttgccttcgactcttacggatttataccaaagagtgctcagccagcatttagag
ctgaatgataaccttcagggatccgacaaggacattgtgcagttatgtaacgtggcatgg
gatggatttaagatgcaaagctcccttttaaaccaaaatcaaaacaaaaacctggtagac
tacggactcaactctgggatacttacgacacgtacacgatatgaagaacctggcaacaag
caggtcacctattttgctaatctttttgtgcagaaccttctaaccgctctgcttttggta
cattctaatgaaatgaatgacaaaacgctgctgggtcagactgcactccaccaacgtaaa
aggaagtctccaggagaatggcaggatgtgctacaaaggttcgtaatgggattactcttt
cagaaaaacacccccccctgtttcagggtcttccaaagcagtactgacctacaggccaaa
agaaaagcagtggaagtccatctggagaatctgaaaccgggtgagctgattcccagcagg
ttactggaactgtttcattgtgtgtacgaggccagaaatgtcaaacttgccaaacttctg
gtcaaaaaccttcctgacaatctgtcattttgcggagctcagctctctccagtggatgtc
tatgttgtttggcatcttctgttgaataccaaaggactcaaacggacattttccattgac
ttgagggacacgtgtgttcctctcagtggtctcaaagagctggttgcgctggactgtgtg
gcctcattccgagcacctacgatggacgccattaatctgtgggaggacctgcatcacagc
aatgatgaactgagtttgaaaaatgccatcgacaagtttactataaaccctctgaaggtg
tctcaggtgtctcatgtggagaacctgctcgttcttgtacaaatccacaatgagaagaag
ctgcccttatgcgaggcggagccggctctagaggacggtgtcccagcagtgagacatctt
cacaagttggagtacgagctcggccagcagaacagtcctgaggtttttctccggcaggcg
gaggtcttatctgctcttcagtctctccatcatctggatctggagaataataaaatgggg
gatgctgaagcggagcagttggccggtgtgctgagctcgctgtcgtctctgaagctgctg
aatctttctcagaactgcatcggagacgccggagtgcagaaactttccgaggccctaccg
tccgcgtcctcgctgcagagcctcagcctgtatggaaacgtgatcggggacagcggcgct
gagagcttggcgtcggttttaccgctcatgacgtctctgctggacctggatgtgaagtac
aacaagttcacagacatcggagccaaaaagctcagcgctgcattaaagaaatcgccgagt
gtgaagtctcttcagatgtggaacgactgtgttccttacggggtttttgagcatcttcag
ctccaagactgcaggattaaagctctataa
DBGET
integrated database retrieval system
