Ictalurus punctatus (channel catfish): 108276871
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Entry
108276871 CDS
T04658
Name
(RefSeq) rab5 GDP/GTP exchange factor isoform X1
KO
K20131
Rab5 GDP/GTP exchange factor
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04137
Mitophagy - animal
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
108276871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108276871
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
108276871
Protein recycling
Other Rab GTPase associated proteins
108276871
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS9
DUF5601
zf-A20
DUF3492
Motif
Other DBs
NCBI-GeneID:
108276871
NCBI-ProteinID:
XP_017344405
Ensembl:
ENSIPUG00000018619
UniProt:
A0A2D0SQ46
LinkDB
All DBs
Position
16:complement(5027375..5039626)
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AA seq
536 aa
AA seq
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MSQRSERRGIHVDQSELLCKKGCGYYGNAAWQGLCSKCWREEYQRARQKQIQEDWELAEK
LQREEDAAYASSHGSQPQPSLTPFSKFEEKKTNEKTRKVTTVKKFFSPSSRSTTKKEKER
NEERERERERERGEKVQGRRESHGEMLLRDLKGIFTHSWEIGSPTEESHEAKSHSPSFVR
QSSVETDQVAREFVDFLKSLKPGREIHKQSRAFVESMGNKKDLGADELSECVQDFYQHMS
DRLLTHFKGSSEKVERVMDQVEKYIMTRLYKSVFCPETTDDEKKDLTTQHRIRALHWVTI
QMLCVPVDEEIPEAADSVVKAITDVIEMDSKRVPRDKLACITSCSKHIFNAIKVTKKEPA
SADDFLPTLIYIVLKANPPRLQSNIQYITRFCNPSRLMSGEDGYYFTNLCCAVAFIEKLD
AHSLNLSVEDFERHMCGGGDGGGSGDVSPRRRSESSSPWPLELLSALQERQQQVLEEARD
LQDELQLWQEGVAREVQNILDKYPLEIKRHAAHTIDSENEENDRLPPPLQPQVFAG
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgagtcagcggtccgagcgacgagggatccatgtggaccaatccgagttgctgtgtaag
aaaggatgcggttactatggtaacgcggcatggcaggggctatgctctaagtgctggagg
gaggagtaccagcgcgcacgacagaaacagatccaggaggactgggaactagctgagaag
ttacagagggaggaggacgcagcgtacgccagcagtcatggctctcagcctcagccctct
ctcactcccttctccaagtttgaggagaaaaagaccaacgagaaaacgcgcaaagtgacc
acggtgaagaagttcttcagcccgtcatcacgcagcaccacgaagaaagagaaagagagg
aatgaagaaagggagagagaaagagagagagagagaggagagaaggtgcagggcaggagg
gagagtcacggagagatgctgctgcgagatctgaagggtatttttacacactcgtgggag
atcggctctccgactgaagagagtcatgaggcgaagtcccacagtccgtcgtttgtgcgt
cagtcgagtgtggagacggatcaggtggcgcgggagtttgtggatttcctgaagagtctg
aaaccgggacgagagattcacaaacagagccgagcctttgtggagagcatgggtaataaa
aaggacctcggcgctgacgagctctccgagtgcgtgcaggatttctaccagcacatgtct
gaccgtctcctcactcactttaaaggttcctctgagaaggtggagcgagtgatggaccag
gtggagaagtatatcatgacacgcctctataagagtgtgttctgtcctgagaccactgac
gatgagaagaaagatctgactacgcagcacaggatccgggcattacactgggtgaccatc
cagatgctgtgtgttcccgtggatgaagaaattccagaagcagctgatagtgtagtgaag
gccattacagatgtaatcgagatggactcgaagcgtgtgccgagagataagctggcctgc
atcaccagctgcagcaaacacatcttcaacgctatcaaggtgacgaagaaggagccggcg
tcagccgatgatttcctgcccacgctcatttacatcgtgctgaaggccaacccgccgcgc
ctgcagtccaacatccagtacatcacacgcttctgcaacccgagccggctgatgagcgga
gaggacggctactacttcaccaacctgtgttgtgcggtggcgtttatcgagaagctggat
gctcactccctcaacctgagcgtggaggatttcgagcgtcacatgtgtggcggtggcgac
ggcggcggatccggtgatgtttctccacgcaggagatccgagtcgtcgtcgccgtggcca
ctcgagctgctctcggctctgcaggaacgtcagcagcaggttctggaggaggcgcgggat
cttcaagatgagctccagctctggcaggagggcgtggcccgcgaggtgcagaacatcctt
gacaaatacccactggagatcaagaggcacgcggcacacaccattgactcggagaacgag
gagaacgacaggctgcctccgcccctgcagcctcaagtgttcgccggttag
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