Ictalurus punctatus (channel catfish): 108276938
Help
Entry
108276938 CDS
T04658
Name
(RefSeq) thrombospondin type-1 domain-containing protein 1 isoform X3
KO
K24433
thrombospondin type-1 domain-containing protein 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108276938
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
108276938
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
THSD1_N
THSD1_D3
THSD1_D2
TSP_1
TSP1_spondin
TSP1_CCN
TSP1_ADAMTS
SRTM1
Motif
Other DBs
NCBI-GeneID:
108276938
NCBI-ProteinID:
XP_017344577
UniProt:
A0A2D0SPE5
LinkDB
All DBs
Position
16:16788361..16795078
Genome browser
AA seq
880 aa
AA seq
DB search
MTQGFTPLMQFLLQLLLMGFAMAGLHLWPSVHVALSNASVFVTYNADSNMTDSELSMDLV
DLDKNVTVLTRPLPFNQSAGILEFDCTYFLYAGNFSFRLDQMGHQGALKSTSSWWSPVLR
IQWPTFHFGVERANNNHNSGAFQVSVSTNLDFHVCLNSNSSLYLEVSYMEHNQIGKNTIN
KVQKRTTHNIQVVKSQHVDLQCASLLTEAGFIQVALKSHYTQQDIKSSGPLYLSRIFSYK
LLVENIYKSGCEGTVSVRLLSPPCTVTTGKVLLYKEASAAPKQENLSQLAFHFLTGGENE
TEFNCSQFDVGQKKYCFHYARIYSQSSSLAHTCIIVQRNAVDMWVPWQTWSGCSVTCGEG
VRERVRECLLPPGGGVQCTGMVREQSLCSLEDCTDVLPPVSVSPPPAVDSFLGGNLVVLA
GISLCLAVILVTILITVWRKVCHAPKCSSARPDSMHSPGGWKNSDEASICGRSVQRPSFS
ESMVATALQKGQTCPVSIRAASDKGVLACQQSFLLPMPLPQDPDRLSPSGQKILPPIFGY
RLAQQQLKEMKKKGLKEDTRVYLVSQSPVDDTMVEATASTSAALTPVPQDLESQEDVNIS
HLRKSPFTEPTWPHRNSATLPDRLSPKVDLMLATPKAMFSDRDRRQERTADWVAMVERNR
LNFSKNPIFRRTSSFNESNLQHLPKPQPFRERSMTQVTPRQHPEGSCRTRNWEHPIPELE
DWSQTKYRIPDSSSDHRQQPWVDMPSFSKSKPTMVHSGSSIPTKNRVTDSHGVGWAPSVG
MDRVERAEQNWNRRGPSPIQRNILARKLREANSSTNNHRQRSSTFSSSDQSRGRFRSLPL
SADYSSSSYGLTEDEQRMMDISGYLGEEDGTGIMKDLRLT
NT seq
2643 nt
NT seq
+upstream
nt +downstream
nt
atgacacagggtttcaccccactcatgcaatttttgctccagctccttcttatggggttt
gcaatggctggtctacatctgtggccgtcggtacatgttgctctaagcaatgccagtgtt
tttgtcacttacaatgcagacagcaacatgacagacagtgaactgtccatggatttggtt
gaccttgataaaaatgtaactgtgctaactagacctctgccattcaaccagtcagcgggc
attctagagtttgactgcacatacttcctatatgctgggaacttcagctttagattagac
caaatggggcaccagggtgcactgaaaagtacctccagctggtggagcccagtactacgc
atccagtggcccactttccactttggagtggaacgtgctaacaacaaccacaactccggg
gcatttcaggtttctgtgtctaccaaccttgacttccatgtctgcctgaacagcaactca
tccctctacctagaggtcagctacatggagcacaaccagattgggaagaacaccatcaac
aaggtgcagaaacgaacgacacacaacatccaggttgtgaagtcccagcatgtggacctc
cagtgtgcctccctgctgactgaggctggcttcatccaagtagctctcaagtcccattat
acccaacaggacatcaaatcctcaggaccactctatctgtctcgcatcttctcctacaag
cttctggttgagaacatctacaagagtggttgtgagggcacagtgtctgtccgcctgctc
tctccaccctgcacagtcacgacagggaaagtgttgctgtataaggaggccagtgctgct
ccaaagcaggaaaatctctctcagcttgcctttcactttctcaccggaggggagaatgag
accgagtttaattgctcgcagtttgatgtcggccagaaaaagtactgctttcattatgca
cgcatctacagtcagtcctccagtttggcacacacatgcatcattgtgcaaagaaatgct
gtagacatgtgggtcccatggcaaacatggagcggatgcagtgtcacctgtggagaaggg
gtgcgagagcgtgtgcgtgagtgcttgctgccccctggtggtggtgtgcagtgcactggc
atggtgagagagcagtcactctgctccctggaggactgcactgacgtcctgcctcccgtt
tctgtctcgcctcctccagctgtggactcctttctcggaggaaacctagttgtgttggct
ggtatctcgctctgtctagctgtcatcctggtcactatcctcattaccgtgtggaggaaa
gtgtgccatgccccaaagtgtagctcagcacggcctgactctatgcattctcccggtgga
tggaagaattcagatgaggcttctatttgtggacgcagcgtgcagaggcctagtttctca
gagagtatggtggcaactgcacttcagaaaggccaaacatgtcctgtgtctattcgagca
gcgtcagacaagggggtactggcctgtcagcagagtttcctcctccccatgcccttaccc
caggatcctgaccggctgtccccctctggtcaaaagattcttccccccatttttgggtac
cgtttggcacagcaacagcttaaggaaatgaagaagaagggacttaaagaggatacacga
gtctatcttgtctcccagagtcctgttgatgacaccatggtggaggccacagcctcaaca
tctgctgctcttacaccagtgcctcaggacctggaaagtcaagaagatgtcaatatcagt
cacctccgcaaatcccctttcacagagcccacatggcctcacagaaactctgccactctg
cctgacagactgagcccaaaggtggaccttatgttggccacaccaaaagctatgtttagt
gatcgggacagacggcaagaacgcactgcagactgggtggcaatggtggaacgaaacaga
ctcaatttttctaagaatccgatcttcaggaggacatctagcttcaatgagagcaacctg
cagcacttacctaagccacagccttttagggagcggagcatgactcaggtgacccctcgc
cagcacccagagggcagctgtagaaccagaaactgggagcatccaatacctgagctggag
gactggtctcagactaaatataggatacctgacagttctagtgaccacaggcagcaaccc
tgggtagatatgccttccttctcgaaatccaaacccacaatggttcattcagggtcttca
ataccaacaaaaaatcgagtaacagacagtcatggagtgggctgggccccatctgttggg
atggatcgagtagaaagggcagaacaaaattggaataggagaggtccatcacccatccag
aggaacattttggcaaggaagttgcgagaagcgaattcatcaaccaacaaccacagacag
agaagttccaccttttctagctctgatcagagcaggggccgattccgaagcctcccactc
tctgcggactacagcagctcctcctatggtctgactgaggatgagcaacgaatgatggac
atttctggatatctgggagaagaggacgggacaggaataatgaaagacctcagactcacc
tga
DBGET
integrated database retrieval system
