Ictalurus punctatus (channel catfish): 108276942
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Entry
108276942 CDS
T04658
Name
(RefSeq) nucleolar transcription factor 1 isoform X1
KO
K09273
upstream-binding transcription factor
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108276942
03021 Transcription machinery [BR:
ipu03021
]
108276942
Transcription factors [BR:
ipu03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
UBF
108276942
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
UBF
108276942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HMG_box
HMG_box_5
HMG_box_2
HMG_WDHD1
Rv0078B
Motif
Other DBs
NCBI-GeneID:
108276942
NCBI-ProteinID:
XP_017344591
Ensembl:
ENSIPUG00000024337
UniProt:
W5UL97
LinkDB
All DBs
Position
2:31511710..31525847
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AA seq
741 aa
AA seq
DB search
MNGAMDSTSKEPVIVWAQDDLLKLLDAMKVNLPEKDLTKYKTTEAHLDWGKVAFNTYSAE
MCKQKWLEVSREIRKFRTLTELIVDAQEYIKNPYKGKKLKKHPDFPKKPLTPYFRFFMEK
RAKYAKLHPEMSNLDLTKILSKKYKELPERKKEKYVHDFIKEKETFELNMLKFKEDHPDL
IENTSKKASNVPEKPLTPQQLWYNHEKKAHLKIHPGATTKDIKESLGKKWTQLPDKKRLK
WITKSLEQHKQYEETMREFIQQHPQLNLTESNIVKTTLTKAERQLKDKFDGRPGKPPSNG
YSMFCAELMSGMKDVPSTERMVMCSQRWKLLKQSEKDAYQKRCEQKKKEYEVEMNRFLCS
ISEEEQQRILAEQKMVGFKKFPGAASPSPKKNSKAKSSPVKPKRPISAMFIFAEEKRQKL
QKERPDLSDSELTRLLARMWNDLSDKKKEKYKNLEAVLKAESEKRGKDEQSKLPDPPKTA
QEIWQHSVIGDYLARFKNDRPKAQKAMEAAWNTMEKKEKIMWIKKAAEDQKRYERELSEM
RSPAGMVAAGKKMKFEGEPKKPPSNGYQKFSQEMLSNGELNHLPMKERMTEIGSRWQSLP
QKEKDRYKKIAEEKQKQYKVQLEQWLSSLTSQERATYKEYNSLKRRNPSKPGGTSAKQKP
KPKISDEEEDDDDDDEEEEEKESEEGSSSAEESEEGDDDEDDDDDNEDEDEEDEEAEDKE
NKSESSSSASSSEVSSDSDSE
NT seq
2226 nt
NT seq
+upstream
nt +downstream
nt
atgaatggagccatggattccaccagtaaagagccagtcatagtttgggcccaggatgat
ttgctgaagctcctggacgccatgaaagtgaatctgccagagaaagacctgaccaagtac
aagacgactgaagctcatctagactgggggaaggttgcttttaacacgtactcggctgag
atgtgcaaacagaaatggcttgaggtctcaagagagatccgtaaatttcgcacactgaca
gagttaattgtcgatgcccaagaatacatcaagaatccttacaaaggcaaaaaactgaag
aaacacccagacttccccaagaagccattgacaccatacttccgctttttcatggaaaag
agagcgaagtatgctaaacttcacccagagatgagcaatctggacctgacaaagatcctt
tccaaaaagtacaaggagctgcctgaacgtaaaaaggagaaatatgtgcatgattttatc
aaagaaaaggaaacttttgaacttaacatgttaaagttcaaggaggaccatccagacctg
atcgagaacacaagcaaaaaagcatccaatgtaccagagaaacctttgacaccacagcag
ctgtggtacaaccatgagaaaaaagctcacctcaaaattcacccaggggccaccaccaaa
gacattaaagaaagtctgggtaagaaatggacacagcttccagataaaaagagactgaag
tggatcaccaaatctctagagcagcataagcagtatgaggagacaatgcgggagttcatt
caacaacacccgcagttgaacctgactgagagcaatattgtgaagaccactttgactaaa
gcagaaagacagctgaaggacaagtttgacgggcgaccaggcaaaccaccatcgaacggt
tactcgatgttctgtgctgagcttatgtctggcatgaaagatgtaccaagcactgagcgc
atggtcatgtgcagccagcgctggaaactgctcaaacagagcgagaaagatgcctatcag
aaacgctgcgagcagaaaaagaaagaatatgaagttgagatgaaccgattcctgtgtagc
atttcagaggaagagcagcagagaatactggcagagcaaaagatggtgggatttaaaaag
ttcccaggcgctgctagccccagtcccaaaaagaactctaaagcaaagagtagtcctgtt
aagccaaagcgaccgatctctgccatgttcatttttgctgaggaaaagaggcagaagctt
cagaaggagaggcctgacttgtctgatagtgaactcaccagacttctggcccgcatgtgg
aatgacctctcagacaagaagaaggaaaaatacaagaacttggaggcagtgctgaaagca
gagtcagagaagcgagggaaagatgagcaaagcaagctgccagacccacccaagaccgcg
caggaaatttggcagcacagcgtcatcggtgattacttggccagatttaagaatgaccgg
ccaaaggcacaaaaagccatggaggctgcatggaacaccatggagaagaaggagaaaatc
atgtggatcaaaaaggctgcagaggaccagaagagatatgagagagagctgagtgagatg
cgctctcctgctgggatggttgccgcagggaagaagatgaaatttgaaggagagcccaaa
aagccaccatcaaatggctatcagaagttttctcaggaaatgttgtctaatggggagctg
aaccacctgcccatgaaagagcgcatgactgaaatcggcagccgctggcagagcctcccg
cagaaggagaaagaccgctacaagaaaattgcagaggaaaaacagaagcaatacaaagtg
caacttgagcagtggctttcgagcttaacatctcaagagagagctacatataaggaatac
aattccttgaaaaggagaaacccgagtaaaccaggtggtaccagtgctaaacagaaaccc
aagcccaagatctcggatgaagaagaagatgatgatgatgatgatgaagaagaagaggag
aaggagtctgaggagggatcatcaagcgcagaggagagtgaagaaggggatgatgacgaa
gatgatgatgatgataatgaggacgaggatgaagaggacgaagaggcagaggataaggag
aataaatctgagagcagcagcagtgcgtccagctcagaggtttcctctgactctgactct
gagtga
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