Ictalurus punctatus (channel catfish): 108277016
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Entry
108277016 CDS
T04658
Symbol
pdlim5b
Name
(RefSeq) PDZ and LIM domain protein 5b isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108277016 (pdlim5b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108277016 (pdlim5b)
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
108277016 (pdlim5b)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
PDZ_2
Motif
Other DBs
NCBI-GeneID:
108277016
NCBI-ProteinID:
XP_017344765
Ensembl:
ENSIPUG00000004731
UniProt:
A0A2D0SQJ1
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Position
16:complement(1342928..1402019)
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AA seq
631 aa
AA seq
DB search
MSRSYSVSLTGPSPWGFRLQGGKDFSMPLTISRLTDGGKAAKAKISVGDVVLSIDGIATD
TMTHLEAQNKIKACTGNLSLTLQRASSVPKGEVPKEESPEIIKPVPISHQPAPALSASPT
NPPPSSAYNKTARPFGGSSNFRAVSPSSTPAAPKASIPSASSAFTPAAPSQQPPPQPPFP
LASSSTSRTVSSLNPAHKPGTAYSPFSHSSSSSSSGSSSPARVTGPSPLSAPVVPQPSVY
NTPINLYSNANACEVAMGQRRGLLEQQGGVEPQNGGPHSILKKTPPRVPRKPIADTEPAV
NHGSHLSDASKKRLIEDTEDWHPRTGTSQSRSFRILAQITGTENEQAHESSPGKNEAVED
VHANTHATSVVKTMTKVSRTGNGVPQPTTVTTKSWQSGNTAGLPKAGVPAVHTGRVTGSV
QKGPDRPAPQPHPKDQDSLVQRAEHIPAGTRTPMCGHCNMVIRGPFLVAMGKSWHPEEFN
CAHCRSSLAEVGFVEERGAVYCEHCYEQFFAPSCCRCQQKILGEVINALKQTWHVYCFLC
TSCQQPIRNNTFHLEDGQPYCERDYYNLFGTSCHGCDFPIEAGDKFLEALGFTWHDTCFV
CSVCSTTLEGQTFFSKKDKPLCKKHAHTVKI
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgagcagaagttacagcgtgtccctgaccggaccctcaccctggggcttcagactgcag
gggggcaaagactttagcatgcctctcaccatctccagattgacggatggaggaaaagca
gccaaagcgaagatcagcgtaggagacgtggtgctgtccatcgacggcatcgcgacggac
accatgactcacctggaggctcagaacaagatcaaagcctgcacgggcaacttgagcctc
accctgcagagagcgtccagcgttcccaaaggcgaagttcccaaggaagaatcaccggag
atcattaaacccgtgcccatcagccaccaacctgcccccgcccttagcgccagccccacc
aacccccccccaagtagtgcctacaacaagacggcccgcccctttggaggatcatctaat
ttcagagcagtcagcccgtcttccactcctgcagcgcccaaagcctccatcccttctgcc
tcctcagctttcacccccgctgctccctcccagcaacctccaccacagccccccttccca
ctggccagcagctccacctcccgcaccgtctcctctcttaaccctgcccacaaacccggc
accgcttactcccctttctctcactcctcctcgtcctcgtcctctggctcgtcttcgcca
gccagagtgacaggccccagccccttatctgctcctgttgtcccacagccttcggtctat
aacacgccaatcaacctgtactccaatgcgaacgcatgcgaggtggctatgggtcagagg
cgcggcctactggagcaacaaggtggagtggagcctcagaacggtgggcctcacagtatt
cttaaaaagactccgcccagagttcccaggaagcccatcgcagatacggagccggcggtg
aaccacggctctcacctgagcgacgccagtaaaaagcgtctgatcgaggacaccgaggac
tggcacccacgcaccgggacctctcagtcccgctccttccgcatcctggcacagatcacg
ggcacggagaacgaacaagcccacgagagcagtccaggaaagaatgaggctgtagaggac
gtccatgcgaacactcatgccacgtccgtggttaaaaccatgaccaaagtgtcacggact
gggaatggagtccctcaacctaccactgtgactaccaagagctggcagtctggaaacact
gcaggacttcctaaagcaggtgtgccagcggtgcatacagggcgggtgaccggtagcgtt
cagaagggtcctgaccgccccgcgccccagcctcaccccaaagaccaggattcgctggtg
cagagagcagaacacatccctgctggaacccgcactcccatgtgtggtcactgcaacatg
gttatcaggggtccgttcttggtggctatggggaagtcatggcacccggaggagtttaac
tgcgctcactgccgcagctctctggccgaggtgggctttgtggaggagcgcggcgccgtt
tactgcgagcactgctacgagcagttcttcgcccccagctgctgccgttgccagcagaag
atccttggggaagtcatcaatgccttgaaacaaacctggcatgtgtattgcttcctgtgc
acttcctgccagcagcccattcgcaacaacaccttccacctcgaggatggacagccctac
tgcgagagagactattacaatcttttcggtaccagttgccatggctgcgacttccctatc
gaggcaggggacaaatttctggaggctctgggcttcacctggcacgatacctgcttcgtg
tgttcggtgtgcagcaccactctagagggtcagactttcttctccaaaaaagacaagccg
ctgtgcaagaagcacgcacacactgtcaaaatctga
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