Ictalurus punctatus (channel catfish): 108277023
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Entry
108277023 CDS
T04658
Name
(RefSeq) serine/arginine-rich splicing factor 9
KO
K21123
serine/arginine-rich splicing factor 9
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
ipu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108277023
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108277023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108277023
Spliceosome [BR:
ipu03041
]
Common components
Common spliceosomal components
SR proteins
108277023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_3
RRM_7
Nup35_RRM_2
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
108277023
NCBI-ProteinID:
XP_017344773
Ensembl:
ENSIPUG00000005511
UniProt:
A0A2D0SPZ5
LinkDB
All DBs
Position
16:776067..782184
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AA seq
239 aa
AA seq
DB search
MADGRIYVGNLPMDVQERDIEDLFFKYGKIRDIELKNNRGTIPFAFVRFEDPRDAEDAVY
GRNGYGFGDCKLRVEYPRSSGSKFGGSGGGPRGRFGPPSRRSEFRVIVTGLPPTGSWQDL
KDHMREAGDVCFADVQRDGEGVVEFLRREDMEYALRRLDGTEFRSHQGETAYIRVLEERG
TSWGRSRSRSRSRGRYTPPYQSRGSPPRYRSPPRHMARLSPPSRRPPPQQHSPPPRHYR
NT seq
720 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgggaggatctatgtggggaaccttcccatggatgtgcaggagagggacatt
gaggatctcttcttcaaatatggcaaaattcgggatatcgagctgaagaacaaccgcggc
accatcccgtttgcctttgttcgttttgaggacccacgggatgcagaggacgctgtctat
ggaaggaatggatatggatttggagactgtaagctgcgtgtggaatatcctcgctcctca
ggatccaaatttggcggatcaggcggaggaccaaggggaaggtttggacctccgtcacgc
agatctgagttccgggttatagttacgggccttcctcccactggaagttggcaagacctt
aaagaccacatgagagaggcaggagatgtgtgctttgctgatgtgcagcgcgacggtgag
ggagtggtggaattccttagacgggaagacatggagtatgcgctgcgtcgactggacggc
acggagttcagatcccaccagggtgagacggcctacatcagagtactggaggagcgtggc
acaagctggggtcgttcccgttctcgttccaggtctcgtgggcggtacactcctccatac
cagagccgaggctctcctcctcgctaccgctcccctccacgccatatggctcgtctcagc
cctccctcgcgaagaccaccgcctcagcaacacagcccaccgccacgccactatcggtaa
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