Ictalurus punctatus (channel catfish): 108277033
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Entry
108277033 CDS
T04658
Name
(RefSeq) GATOR complex protein DEPDC5 isoform X1
KO
K20404
SEA/GATOR complex protein SEA1/DEPDC5
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04150
mTOR signaling pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04150 mTOR signaling pathway
108277033
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108277033
Membrane trafficking [BR:
ipu04131
]
Autophagy
Other autophagy associated proteins
SEACIT/GATOR1 complex
108277033
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEPDC5_CTD
vWA_IML1
IML1_N
IML1_small
DEP
IML1_N_fung
Motif
Other DBs
NCBI-GeneID:
108277033
NCBI-ProteinID:
XP_053542609
Ensembl:
ENSIPUG00000022568
UniProt:
A0A9F7RKR0
LinkDB
All DBs
Position
16:23704645..23734926
Genome browser
AA seq
1591 aa
AA seq
DB search
MTIATKTKTYKLVVHKKGFGGSDDELMMNPKVFPQVKLGDIVEIAHPNDEYSPLLLQVKS
LKEDLQKETISVDQTVAQAFKLRAYQDVIINIVDPKVVTLDLVELTFKDQYIGRGDMWRL
KKSLVSTCAYVTQKVEFAGIRAQASELWVKGEKVTCGYISEDTRVVFRSSSAMVYIFIQM
SCEMWDFDIYGDLYFEKAVNGFLSDLFTKWKEKNCSHEVTVVLFSRTFYAAKTQDEFPES
QRGSIRQDHEGRYYEDFYRVVAQNERRDEWTSLLVTIKKLFIQYPVLVRLKGADGFPCGQ
NSTAAQGNYLEAINLSFNVFDKHYINRNFDRTGQMSVVITPGVGVFEVDRLLMILTKQRM
IDNGIGVDLVCMGEQPLHAVPLFKLHNRTVPGDSRLDDYNLPHWINHSFYTSKSQGLCSS
FTPRIKLAGQKLHVEKSKSSKEHSLGAPKDSQNSLPIQVDYDAHDAQVFRLPGPARAQRG
SNFRSGREKEVSIRRSWCLAEVSGGHYGGCSPPSRPVGGTDEQRSLASDDSLGHISNILL
IPRQPPQYEVSSSLGYTSCARELLEKLVESQRDSSAPGRFTVGSAESTLHIRPGGYTPQR
ALINPFAPSRMPMKLTSNRRRWMHTFPVGPSGEAIQIHHQTRQNMAELQGSEQRDPAHTS
AELLELAYHEAMGRRSGIPNTADSGLYISGGTDDFSGSPASSNSTGTPVNRGSFDECSSG
PDPTLQLSAPPTVPAFCCTVGVDWKSLTTPACLPLTTDYFPERQSLQNDYTEGCYDLLPH
TDLDRRDDEAPVMSAPRVFEEFICQRLMQGYQIIVQPNSRKAPPTVAPPLSSSPLYSRGL
VSRRKAEEEESLYWLSMGRTFHKVCLKDKIITVTRYLPKYPYESTQIQYSYSLCPPHADG
HFVPCWVEFGHERLEEYKWNYLDQYICSAGSEDFSLIDSLKFWRTRFLLLPAGGARRVAD
GEGHWDVYGEGPGAAAGSGDWALLDGFIRFLEGLNRIRRRHRSDRIIRKGAAMKGLQVTS
PLSPYTTEPLAPPLVKKGASALTTLLELDQTHKTLEDQQAASQHAVVKTNTSFNDAAAVI
AMATTYVDSPRKDAAFMLDFIRSPRSSYLSHSQIPAEPPAANPADSGSIEKGGNLSNDRM
VVGGATETTSGPEPGAQQGNLSSSSTMLEILEAIKHPNTGVQLLPEQKCLTPNCFISAEV
VHWLMNTVENVATQGIAVEIMQKMLDEGLIAHASGEAMRTFVYGFYFYRIVDKENEKAPC
SSAVSTAALDDFALFQRKWFEVAFVLEERRPCDLPAFLLPWLPSRPASYASRHSSFSRSF
GGRSQAAALLAATVPEQKTVTLDVDVNNRSDRTEWCSCYYHGNFSPNTAFEIKLHWMAVT
AAVLFEMVQGWHRKAASCGFLLVPVLEVPFALPSYLYGDPLRAQLFIPLNIQCLLKDAND
NLFDGFEPETYWDRMQLFQEAILYRFGFVQDKFSASAYSFPAENKPQYIHVTGTLFMQLP
YSKRKYSSGQQRRRRNSASSASQCLFGPEERVGYHWAYNTMLTKAWRTGVLGDEKLAERL
LRDFTDFCANKDNRLVSFWENCLEKMNSSAP
NT seq
4776 nt
NT seq
+upstream
nt +downstream
nt
atgaccatcgctaccaaaaccaaaacctacaaactggtagtccataagaagggcttcgga
ggaagcgatgacgagctgatgatgaacccgaaggtgtttcctcaggttaaactgggggac
atcgtggagatcgcacaccccaatgatgagtacagtccgctcctgctccaggtgaaaagc
ctgaaagaagacctgcagaaagagacgatcagtgtggaccagaccgtcgctcaggccttc
aagcttcgtgcatatcaggatgtcattattaacatcgtggatcccaaggtcgtgacactg
gatctggtggagctcaccttcaaagaccagtacatcggccgaggggacatgtggagactc
aagaagagtctggtgagcacgtgtgcgtacgtgacccagaaagtggagtttgcagggatc
agggctcaggcgagtgagctgtgggtgaaaggcgagaaggtcacttgtggttacatcagc
gaggacacaagggtggtgtttcggtccagctcggccatggtgtacatcttcatccagatg
agctgtgagatgtgggacttcgacatctacggtgatctctattttgagaaggcagtgaat
ggtttcctctctgacctgtttaccaagtggaaagagaaaaactgcagccatgaggtcacg
gtggtgttgttctcccgtaccttctacgctgccaagacgcaggatgagtttcctgagagc
cagagaggatccatcaggcaggatcacgagggacgctactacgaggatttctacagagtc
gtggctcagaacgagaggagggacgagtggacgtctctgctggtcaccattaagaagctc
ttcatccagtatccagtgctggtgcgcctcaaaggagcagatgggtttccgtgcggtcag
aactccactgccgctcaggggaattacctcgaagccatcaacttgtcatttaacgttttc
gataagcattacatcaaccgtaactttgaccgcaccggtcagatgtcggtggtgatcacg
ccgggagtgggagtgttcgaggtggaccggctgctcatgatcctcaccaaacagcgcatg
atcgacaacggtatcggagtggacctggtgtgtatgggagagcagccgcttcatgccgtc
ccactctttaagttacacaaccgaaccgtaccgggtgactccagactggacgactacaat
ctgcctcactggatcaatcacagcttctacacgtcgaagagtcaaggcttgtgcagctca
ttcactcccagaattaaacttgccggtcagaagctccatgttgagaaatcaaagagcagc
aaagagcactcgcttggggctcctaaggactcgcagaacagtcttcccatccaggtggac
tacgatgctcatgatgctcaggtcttcagacttcctggacctgcgagagcacagaggggc
agcaacttccggtcaggcagagagaaggaggtgagcattaggaggagctggtgcttggcg
gaggtgagtggaggacactacgggggctgctctcctccttcccgtcctgtaggaggcaca
gatgagcaacgcagccttgcgtccgatgacagcctgggccacatctcaaacatcctgctg
atccctcgccagccgcctcagtacgaagtcagcagctcgctcggctacaccagctgtgcc
agagagttgctggagaagctggtggagtctcagcgggactcgagcgctccgggccgcttc
accgtgggcagtgccgagtcgacgctgcacatccgcccgggcggttacacgccccagaga
gctctcatcaacccattcgccccctcacgcatgcccatgaagctcacttccaaccgccgc
cgctggatgcacaccttccccgtgggtccctccggcgaagccatccagatccaccaccag
actaggcagaacatggccgaactgcagggcagtgagcagcgtgaccccgcccacacttct
gctgagctgctggaactggcctatcatgaagcaatgggcaggcgatcaggaatccctaat
actgcagacagtgggctgtacatcagtgggggaactgatgatttttctggtagtccagcc
agcagcaatagcacaggtacaccagtcaaccgcggctctttcgacgagtgctccagcggt
ccggatccaaccctgcagctctctgcccctcctacagtgcctgcgttctgctgtacagtc
ggcgtggactggaagtctctgaccacgccggcgtgtctccctctcaccaccgactatttc
ccagagcgccagtcgctgcagaacgactacacggagggctgctatgacctgctgccacac
actgacctggaccggcgtgatgacgaggcccccgtgatgagcgcaccacgtgtgtttgag
gagtttatctgccagaggctgatgcagggctatcagatcatcgtccagcccaacagcagg
aaagctccgcctaccgtggctccgcccctcagcagcagccctctctactccagggggctg
gtgtctcggaggaaggccgaggaggaggagagtctgtactggctcagtatggggcgaact
ttccacaaagtctgtctaaaagacaaaatcatcaccgttacacgctacctgcccaagtat
ccgtacgagtccacccagattcagtacagctacagtttgtgcccccctcatgccgacggc
cattttgtgccgtgctgggtggagttcggtcacgagcgactggaggagtacaagtggaac
tacttggaccagtacatctgctccgccggctccgaggacttcagtcttatcgactcgcta
aagttctggcgcacccgcttcctgttgctcccggcgggcggggccaggcgtgtggcggac
ggcgagggccactgggacgtgtatggggagggaccaggggcagcggcgggctctggagac
tgggctctgctcgatggcttcatacgctttctggaggggctgaacagaatccggagacga
catcgatccgaccggatcatccggaaaggcgcggccatgaagggtcttcaggtgacgtca
ccgctctctccttacaccacagagcctctagcacctccgctggttaagaaaggcgcttcg
gctctcactacactgctcgagctggatcagactcacaagactctggaggatcagcaggct
gcctctcagcatgcagtggttaaaacaaacacgtcattcaatgatgctgctgctgtcatt
gccatggcaactacctatgttgacagccctagaaaggacgctgcgttcatgttggatttt
attcgtagccctcgctcctcctacctgtctcactctcagattcctgccgagcctcctgca
gccaatcctgccgattctgggtcaatagagaaaggagggaacctatcaaatgacaggatg
gtggtgggcggagctacagagactacttcaggacctgaaccaggggctcagcagggtaac
ctgtcctcctcctccaccatgctggagattctggaggccatcaaacacccgaatacgggc
gtccagttgctgcctgagcagaaatgtttgacccctaactgcttcatcagtgctgaggtg
gtgcactggctgatgaacaccgtggagaacgtggccacgcaaggcatcgctgtggagatc
atgcagaaaatgctcgacgaaggcctgatcgctcacgcgtccggcgaggccatgcgcacg
ttcgtctacggcttctacttctacagaatcgtcgacaaggagaacgagaaggccccgtgc
agcagcgctgtgtctacggcggcgctcgacgactttgcgctgttccagaggaagtggttc
gaggtggcgttcgtgctggaggaacgtcgcccgtgtgatcttcccgccttcctgctgccg
tggctgcccagccgacccgcctcgtacgccagccgacacagctcgttcagccgcagcttc
gggggacgcagccaagccgccgccctgctagccgctacagtaccggagcagaagacggtc
actctggacgtggacgtgaacaaccgcagcgatcgtaccgaatggtgtagctgctattac
catggcaacttctcgcccaacacggccttcgagatcaagctgcactggatggccgtgacg
gcggcggtgctcttcgagatggtgcaaggctggcacaggaaggcggcgtcctgcggtttc
ctgctggtaccagtgctggaggtgccgttcgctttgccctcgtatctgtacggagacccg
ctgcgcgctcagctcttcatccccctcaacatccagtgccttctcaaagacgcgaacgac
aacctgttcgacgggttcgaaccagagacgtattgggaccggatgcagctcttccaggag
gccattctttacaggtttggctttgtccaggataaattttctgcctcggcttacagcttc
cctgctgaaaacaagccgcagtacatccacgtcacaggcacattgttcatgcagttgccc
tactcgaagaggaaatactcgagcggtcagcagcggcgccggcgtaactccgcctcctcg
gcaagtcagtgtctgtttggccccgaggagcgtgtcggctaccactgggcctacaacacc
atgctgaccaaagcgtggcgcaccggcgtcctgggagacgaaaagctcgccgagcgtctc
ctccgagacttcactgacttctgcgccaacaaagacaaccggctcgtgagtttctgggag
aactgtctagagaaaatgaactccagcgccccctga
DBGET
integrated database retrieval system
