Ictalurus punctatus (channel catfish): 108277035
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Entry
108277035 CDS
T04658
Symbol
mtrex
Name
(RefSeq) exosome RNA helicase MTR4
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108277035 (mtrex)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108277035 (mtrex)
03041 Spliceosome [BR:
ipu03041
]
108277035 (mtrex)
03009 Ribosome biogenesis [BR:
ipu03009
]
108277035 (mtrex)
03016 Transfer RNA biogenesis [BR:
ipu03016
]
108277035 (mtrex)
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108277035 (mtrex)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108277035 (mtrex)
Spliceosome [BR:
ipu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108277035 (mtrex)
Complex C
U4/U6.U5 tri-SnRNP related factors
108277035 (mtrex)
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Pre-60S particles
Helicases
108277035 (mtrex)
Transfer RNA biogenesis [BR:
ipu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108277035 (mtrex)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Motif
Other DBs
NCBI-GeneID:
108277035
NCBI-ProteinID:
XP_017344797
Ensembl:
ENSIPUG00000024348
UniProt:
A0A2D0SQ22
LinkDB
All DBs
Position
16:22830315..22859593
Genome browser
AA seq
1036 aa
AA seq
DB search
MAEAFGDDLFSVFDDEQTTSTKKTSSKTESRVGKVAGTRGRENTESPPGAKTKREAENDG
ADEVSFGKKAKMDTVSPEEINLADLMPKVKVEQVETVEGCTHEVALPADQEYTPLKPRVG
KAAKEYPFILDPFQREAILCIDNNQSVLVSAHTSAGKTVCAEYAIALALREKQRVIFTSP
IKALSNQKYREMYEEFQDVGLMTGDVTINPTASCLVMTTEILRSMLYRGSEVMREVAWVI
FDEIHYMRDAERGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHTQPCHVVYTD
YRPTPLQHYIFPAGGDGLHLVVDENGEFREDNFNTAMQVLRDSGDSGASGGKWDPRGRRG
GTKGPSNVYKIVKMIMERNFQPVIIFSFSKKECEAYALQVSKLDFNTDEEKKLVEEVFSN
AIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKEAIEILFSEGLLKALFATETFA
MGINMPARTVLFTSARKFDGKDFRWISSGEYIQMSGRAGRRGMDERGIVIFMVDEKMSPA
IGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYMLEKSFYQFQHYRAVPGVVEKMQ
KLEEMYNSIEIPNEDSVVTYYKIRQQLAKLAKEIEEYVHKPKYCLPFLQPGRLVKVKKGD
LDFGWGVVVNFSKKSNVKASTGDLDPLYVVEVLLHCSKESVKNAATEAAKPAAQGEKGEM
QVVPVMLNLLTSISSVRLYIPKDLRPYDNRQSMLKSIQEVQKRFPDGLPLLDPIDDMGIT
DSGLKKVIQKVEAFEHRMYTHPLHTDPGLGAVYTLCEKKAVIAGDIKAAKRELKRARTVL
QMDELKCRKRVLRRIGFATSSDVIEVKGRVACEISSADELLLTEMMFNGLFNDLTAEQAT
ALLSCFVFQENATEMPKLTEQLAGPLRQMQECAKRIAKVSAEAKLDVDEDAYLSQFRPHL
MDVVYTWANGATFSQICKMTDVFEGSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAIG
ITKIKRDIVFAASLYL
NT seq
3111 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagccttcggagacgacttgttcagcgtttttgacgatgaacagacaacttcg
actaaaaagacgagctcaaagaccgagtctcgggtcgggaaagtagctggcacacgtggc
agagaaaatacagaatctccgcctggggcaaagacgaaacgggaggcagagaacgatggt
gctgacgaggtttcgtttggtaaaaaggccaaaatggatacggtgtcaccggaggagatc
aatcttgctgacttgatgcctaaagtcaaagtagagcaggtcgagacggtggagggctgc
acgcatgaggtggcgctgcctgcagatcaggaatacacaccactgaagccacgagtagga
aaagcagccaaggagtacccgttcattcttgatccgtttcagcgcgaggccattctgtgc
atcgacaacaaccagtctgtcctcgtgtccgctcacacctcagccgggaaaaccgtgtgc
gccgagtacgccattgctctggctctgagggagaaacagcgagtgatcttcaccagcccc
attaaagctctgagtaatcagaaatacagagagatgtacgaggagttccaggatgtggga
ctgatgactggagacgtaactattaaccctactgcctcctgcctcgtcatgaccactgag
attttgaggagcatgctgtaccgggggtcagaggtcatgcgggaggtggcctgggtcata
tttgacgagatccattacatgagggacgcagagcgtggtgtggtatgggaggagaccatc
atccttcttcccgataacgtgcattacgtgtttttgtcggccaccatccccaacgcgcgg
cagttcgccgagtggatctgtcacctgcacacacagccatgccacgtggtgtacacagac
taccgacccactccgctgcagcactacatctttccagcagggggcgacggactccacttg
gttgtggatgagaatggagagttcagggaggataacttcaacacagccatgcaggttctc
cgggattccggagactccggagcgagtggaggaaaatgggaccctagaggaagaagaggc
gggaccaagggtccatccaacgtgtataagatagtgaagatgatcatggagaggaacttc
cagcccgtcatcatcttcagcttcagtaagaaggagtgtgaggcgtacgctctgcaggtg
tccaaactcgacttcaatacagatgaagagaagaagctggtggaggaggtttttagcaac
gccatcgactgtctgtccgatgaggataaaaagctgccacaggtggaacatgttctgcct
ctgttgaagagaggaatcgggatccatcatggcggactgctgcccatcctgaaagaggcc
atcgagattcttttctctgagggactactgaaggccttgtttgcaacagagacatttgcc
atggggatcaacatgcctgctcgcaccgtgctcttcaccagcgcacgcaagtttgacggc
aaggacttccgctggatcagctcgggtgagtacatccagatgtcgggccgagccgggagg
agagggatggacgagagaggaatcgtcatctttatggtggatgagaagatgagtccagct
atagggaagcagctcttgaagggttctgctgaccctctgaacagcgccttccacctgacc
tataacatggtcctgaacttgctgcgtgtggaagagattaaccccgagtacatgctggag
aagtccttctaccagttccagcattacagggctgttcctggtgtagtagagaagatgcag
aagctggaggagatgtacaacagcatcgagatccccaacgaggacagcgtggtcacttac
tataaaatccggcagcagttagccaaactggccaaagagatcgaagaatacgtgcataaa
cccaaatactgcctgcctttcctacagcctggccgcctagtcaaggtgaaaaagggtgat
ttggattttggctggggcgtcgtcgttaacttctccaagaaatcaaacgtcaaggccagt
actggtgatctggaccctctgtatgtagtggaagttttattacactgcagtaaggaaagt
gtgaaaaacgctgcaacggaggcagcgaaaccagcggcacagggagagaaaggagagatg
caggtggtgccggtcatgctgaatctcctcacctccatcagttcagtgcggctctacatc
cccaaggacctgcggccctacgacaacagacagagcatgcttaaatccatacaggaggta
cagaaacgtttccctgatggtctccctctgttagaccccatcgatgatatgggaattaca
gactcagggctgaagaaggtcatccagaaggtggaggcattcgagcacaggatgtacaca
cacccactccacacagaccccggcctcggggctgtttacacactttgcgagaagaaagca
gtgattgcaggagatatcaaggcggcaaagcgggagttgaagagagcccgcaccgtgctg
cagatggacgagctgaagtgtcggaagcgtgttctgcgacgcatcgggttcgccacgtcc
tccgatgtcatcgaggtcaaagggcgggtcgcgtgcgagatcagcagtgcggacgagctg
ctcctgaccgagatgatgtttaacggtctctttaacgatctgactgctgagcaagccacg
gctttactgagctgctttgtcttccaggaaaatgctactgagatgcctaaacttacagag
cagttagcaggcccactccgacagatgcaggaatgtgccaagcgcatcgctaaagtctcg
gccgaggcgaagctggacgtggatgaggacgcctacctgagccagttccgtcctcacctc
atggacgtagtgtacacttgggccaacggagccaccttctctcagatctgcaaaatgacc
gatgttttcgaaggcagcattatccgctgcatgaggcgcctggaggagcttctgaggcag
atgtgccaagcggccaaggccatcgggaacactgagcttgagaacaagttcgccatcggc
atcacgaagatcaagcgtgacattgtgtttgctgccagtctttacctgtga
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