Ictalurus punctatus (channel catfish): 108277149
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Entry
108277149 CDS
T04658
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 1 isoform X1
KO
K11367
chromodomain-helicase-DNA-binding protein 1 [EC:5.6.2.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108277149
03036 Chromosome and associated proteins [BR:
ipu03036
]
108277149
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
108277149
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
SAGA complex
108277149
SLIK complex
108277149
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
HTH_CHD1_Hrp3
CDH1_2_SANT_HL1
Helicase_C
CHD1-like_C
Chromo
HDA2-3
DEAD
Motif
Other DBs
NCBI-GeneID:
108277149
NCBI-ProteinID:
XP_017345081
Ensembl:
ENSIPUG00000001369
UniProt:
A0A2D0SQV7
LinkDB
All DBs
Position
16:complement(18976250..18996717)
Genome browser
AA seq
1816 aa
AA seq
DB search
MDGRSEDESVSNSSGDSSNSDDESGSGSGSGSGSGSSSSSSSSSSSQSGSSDSGSGSDSG
SQSDSDSEKSKGKNGQNNSAKIDSSEFWKSNPSILAVQRSAMLRKQQQQQQQQQQQSSSN
SDSDEESSSSDDSDDDSSRKRKSKGTGSESDSGSGSGSGSGSDSSNSSAEEEAENSEESV
SDYEPSHKVKSRKPPNKINARNGKKSKVSKKKPSASSSDEDDDYKKALAGPRRQATVNIS
YKEDEELKTDSDDLVEVCGEDVPPPEEDEFETLERVMDVRIGRKGATGATTTVYAVEADG
DPNANFNPNKQPGDVQYLIKWKGWSHIHNTWETEETLKQQNVRGMKKLDNFKKKEQEKKK
WLKTASPEDVEYLNCQQELMDDLHSQYQLVERIISHSNQKSAAGYPDYLCKWQGLPYSEC
SWEDGALIARKFQKCIDDYMSRNQSKTIPFRDCKVLKLRPRFVPMKKQAHYIGGEGLELR
DYQLDGLNWMAHSWCKGNSCILADEMGLGKTIQTISFLNYLFHEHQLYGPFLLVVPLSTL
TSWQREIHLWAPLMNVVVYLGDISSRNMIRTHEWMHAHNKRLKLNILLTTYEILLKDKSF
LGNVSWAFIGVDEAHRLKNDDSLLYKTMIEFKSNHRLLITGTPLQNSLKELWSLLRFIMP
EKFHSWERFEEEHGKGRDSGYTSLHKELEPFLLRRVKKDVEKSLPAKVEQILRVEMSAIQ
KQYYKWILTRNYKALSKGTKGSTSGFLNIMMELKKCCNHCYLIKPPEDNEFYNKAEALQH
LIRSSGKLVLLDKLLVRLKERGHRVLIFSQMVRMLDILADYLKSRQFLFQRLDGSIKGEM
RKQALDHFNAEGSEDFCFLLSTRAGGLGINLASADTVVIFDSDWNPQNDLQAQARAHRIG
QKRQVNIYRLVTKGSVEEDIIERAKKKMVLDHLVIQRMDTTGKTVLHTGAAPSSSSTPFN
KEELSAILKFGAEELFKEPEGEEQEPQEMDIDEILKRAETRENDPGPSTVGEELLSQFKV
ANFTMMEEEDMDMDSDGNRKTWDSIIPEEQRRRLEEEERQKELAEIYMLPRMRNCAKQIS
FNGNEGRRSRNRRYSGSDSDSASDRKRPKKRGRPRTIPRENIKGFSDAEIRRFIKSYKKF
GGPLERLDAIARDAELVDKSEHDLRRLAETVHNGCLKTLRENPCGPEKTSGGRRGKVKGP
TFRISGVQVNAKLVISHEEELAPLHKAIPADPEERKRYMLPCHAKAAHFDIEWGKDDDSS
LLIGIYEYGYGSWEMIKMDPDLNLTHKLLPDDPDKKPQAKQLQTRADYLIKLLSKDLAKK
EAQRQTGMANSRKRKPRGKKNKTVKPKMDEMVNSLSSAPPSEKSSEDEDYKEDEKDSPPA
KPTPPNRRGRASDRVIKEEEEEEEEEEEEEEDEEPEPEPTVKEPEEKEIKEREIKKDIKQ
DKKEEGRDIKVKKEPKEKKESKPVEYRVEESFIEKSPEIKGEVREKSKKADTPVHITAGG
ENVPVSEESEELDQKTFSVCKERMRPVKAALKQLDRPEKGLSEREQLEHTRQCLIKIGDH
ITDCLKEYTNLEHIKQWRRNLWIFVSKFTEFDARKLHKLYKHAIKKRQENAQAADQNTST
VNTQAFRHTDIERLKDSQQDESSRDSYSSDRHHSTSRSHEQSKERHSGDAYRKSSDSRKR
PYSSFSNGKDHRERDHYRERQDSRYYSDSKHRKLDDHRSSRDNWSDGNNKERVHPEHRSL
SEHRSSSDYSHHKASRDYRYHSDWQLEQRASGSGPRSPRDQRSPYDSRSPMGHRSPFEYS
SEHKSTPEQVWSSRKT
NT seq
5451 nt
NT seq
+upstream
nt +downstream
nt
atggatggccgcagtgaagatgaaagtgtgagcaacagcagcggagattccagtaactcg
gacgatgagtctgggtctgggtctggatctggttccggttctggttccagctccagcagc
agcagctccagtagcagccagtcagggagcagcgactcaggaagtggctcagactcgggc
agccagtccgattctgactctgaaaagtccaaggggaagaatggtcagaataactctgcc
aagattgattcatcagaattttggaagtctaatcccagtatcctggcagtgcagaggtca
gctatgctcaggaaacagcagcagcagcaacaacaacaacagcaacagagctcgtcaaac
agtgactcggatgaggaatcctccagtagtgatgactcggatgatgactcttcgaggaaa
cgaaagagtaaaggaactggttccgagtccgattctggatctggctctggatctggttca
gggagtgactcctccaattcttcagccgaggaagaggcagagaacagcgaagagtctgtt
tcagactatgagcctagccacaaagttaaaagcaggaaaccacctaacaagattaatgcc
agaaatggaaaaaagagcaaggtttcaaaaaagaagccctcagcctcttcgtcagacgag
gatgatgactataaaaaggctctggcaggtcctcggaggcaggctacagtgaacatcagc
tataaagaggatgaagaactgaaaacagactctgatgacttggtggaggtgtgtggggag
gacgtcccaccgcctgaagaggatgagtttgagactctggaaagagtgatggacgtgaga
ataggacgaaaaggagccactggggctaccaccacagtctacgctgttgaggctgacgga
gatcctaatgccaacttcaacccaaacaagcagccaggagatgtgcagtacttgatcaaa
tggaaaggttggtcacacattcacaatacctgggagacggaggagacgctgaagcagcag
aacgtgagggggatgaagaaactggacaatttcaaaaagaaggaacaggaaaagaaaaag
tggctcaaaacagcttcacctgaggatgtggaatacttaaactgccagcaggagctcatg
gatgacctgcattcacagtatcagcttgtggagagaattatcagccattcaaatcagaag
tcggcagcaggctacccagactacttatgcaaatggcaagggcttccatattcagaatgc
agctgggaagacggggcacttatcgctagaaagttccagaagtgcatagatgactacatg
agccggaaccagtccaaaacaatccccttcagggactgcaaggttttgaagctgaggcca
cggtttgtgcccatgaagaaacaggctcattatatcggtggagaaggacttgagcttcga
gactaccagttggacggcttaaactggatggcccattcgtggtgcaaagggaatagttgt
attctagcagatgagatgggccttggaaagaccattcagaccatctcctttctgaactat
ctgttccatgagcaccagctctatgggccgttcctactggtggtgcccttgtctacactc
acctcttggcagagggaaatccatctctgggccccactgatgaacgtggtcgtctacctg
ggtgacatcagcagtaggaacatgatcagaacccatgagtggatgcatgcccacaacaag
cggctaaagctcaacatccttctcactacgtatgaaatcctcctgaaagataagtcattt
ctggggaacgtgagctgggcatttattggtgtggacgaggcccacaggttgaagaatgat
gattcccttttgtataagaccatgattgagttcaagtccaatcaccggctccttatcaca
ggaacacctctgcagaattccctcaaagagctatggtcactcctccgcttcatcatgcca
gagaagtttcactcgtgggagcggtttgaggaagagcacggtaaaggcagggactcgggc
tacactagcttgcacaaggagctggagcctttcttgctacgcagggtcaagaaggatgtg
gagaagtcactacctgccaaggtggaacagatccttagggtggagatgagtgccatccag
aaacaatactacaagtggattttgacaagaaactacaaggcactcagcaaaggcacgaag
ggaagcacgtccggtttcctcaacatcatgatggagctgaagaagtgctgtaaccactgc
tacctcatcaaaccaccagaggacaatgagttttacaacaaagcagaggccttgcagcac
ctaattcgcagtagcggtaagctggtacttctggacaagctcctggtgcggctgaaggag
cgcggccaccgtgtgctcatcttctcccagatggtccggatgctggacatccttgcagac
tacctgaagagccgccagttcttattccagaggttggatggttccatcaagggtgagatg
agaaaacaggcgttggatcatttcaatgcagaagggtctgaggacttctgtttcctgttg
tccacacgagcaggtggcctgggcattaacttggcttctgctgataccgtggtcatattt
gactcagactggaacccccagaatgacctgcaggctcaggcaagagctcacaggataggg
cagaagagacaggtaaatatttatcgtttggtgactaaggggtctgtggaagaagacatc
attgagcgagccaagaagaagatggtgctggaccaccttgttattcagaggatggacact
acagggaaaacagttcttcatactggtgctgctccttccagcagttccactcctttcaac
aaagaggaactgtctgcgattttaaagtttggtgctgaagaactttttaaggagccagag
ggagaagaacaagagccccaggagatggatattgatgagattctgaagagagcggagacc
agagaaaatgatcccggtccatctaccgtaggagaagagcttctctcacagttcaaggtg
gcaaacttcaccatgatggaggaggaagatatggacatggattcagatggcaaccggaag
acctgggattcaatcattcctgaagagcagcggaggagactggaggaagaggagaggcag
aaggagctagcagagatctatatgctgccccgcatgaggaactgtgccaaacagataagc
tttaatggtaacgaaggcaggcggagccggaacagaagatattctggctctgacagtgac
tctgcctcagaccgaaagaggcccaagaagcgaggcagacctcgaactattcctcgagag
aacatcaagggcttcagtgacgctgaaatacgaaggttcatcaaaagttacaagaagttt
ggcggccctttggaaaggctggatgctattgcccgggatgctgagctggtggataaatcg
gagcatgacctgaggcggctagcagagacggtacacaatggctgtctgaaaaccctgagg
gaaaatccatgtggaccagaaaaaacctcagggggcaggcgagggaaggtgaagggacct
accttcaggatctcaggtgttcaagtgaatgctaagctagtaatctcacatgaggaggaa
ctggcccctttgcacaaagccattcctgctgaccctgaggagaggaagaggtatatgctt
ccttgccatgcaaaggcagcacattttgacatcgaatggggaaaagacgatgactccagc
cttcttattggtatttatgagtatggctatgggagctgggagatgattaagatggaccca
gaccttaacctcacccacaagcttttaccagacgatcctgataagaagccacaggccaaa
cagctccagacacgcgctgactacctcatcaaattactcagcaaggacctcgccaaaaag
gaggcccagaggcaaacgggcatggctaattctcgaaagaggaagccacgtggaaagaag
aacaaaactgtgaaaccgaaaatggacgaaatggtcaacagtctgtcatctgctcctccc
tcagagaagagctcagaagatgaggactacaaggaagatgaaaaggactccccacctgcc
aagccaacaccaccaaacagaaggggacgagcttctgatcgggtgataaaggaagaagag
gaggaggaagaggaggaggaggaagaagaggaggacgaggaaccagagcccgaacccact
gtcaaagagccagaggagaaggagataaaagagagagagataaagaaagatatcaaacag
gataagaaagaggaaggtcgggacatcaaagtgaaaaaggaacccaaagagaaaaaggag
agcaagcctgtggagtacagagtagaggagtctttcatagagaagtctccagaaataaaa
ggtgaagttcgggaaaagagcaaaaaggcagacacgcctgtccatatcactgctggagga
gagaatgttccagtctccgaggaatctgaggagctcgaccagaagaccttcagtgtgtgt
aaggagcgcatgcggccggtgaaggcagccttaaaacagctggatcgtcctgagaaaggt
ctttctgagcgtgagcagctagagcatactcgtcagtgcctaatcaaaattggtgaccac
atcaccgactgtctaaaagagtacaccaaccttgaacacatcaagcagtggagaagaaat
ctttggatatttgtttccaaatttacggagtttgatgcaaggaaacttcataaactgtat
aagcatgcaatcaagaaaagacaggaaaacgctcaggcagcggaccaaaacactagcact
gtaaatacacaagcctttagacacacagacattgagaggttaaaggactctcagcaagac
gagagcagtagagacagctacagttcagaccgacaccactcgacctcacgcagccacgag
cagagcaaagagcgccactctggtgacgcgtacaggaaaagctcagactccaggaagaga
ccgtactcctccttcagcaatggcaaagaccacagagagcgagaccactacagagagcgc
caggacagcagatattacagcgacagcaagcataggaagctagatgatcaccgttctagt
cgagacaactggtcagatggcaacaataaggagcgtgtacacccggagcaccgttccctc
tcggagcaccgctccagctcggactacagtcaccacaaggcctctcgtgactatcgctat
cactcagactggcaattggagcagcgcgcttcgggtagtgggccacgttctcctcgagac
cagagatcgccctatgactcccgatcgcccatgggccaccggtcgccttttgagtactct
tctgagcacaagagcacgcccgagcaggtctggagcagtcgtaagacatag
DBGET
integrated database retrieval system
