Ictalurus punctatus (channel catfish): 108277181
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Entry
108277181 CDS
T04658
Name
(RefSeq) vacuolar protein-sorting-associated protein 36
KO
K12190
ESCRT-II complex subunit VPS36
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108277181
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108277181
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108277181
Membrane trafficking [BR:
ipu04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT-II complex
108277181
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108277181
Exosomal proteins of colorectal cancer cells
108277181
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAP30
Vps36_ESCRT-II
Xre-like-HTH
GRAM
BBL5
Laminin_II
Flu_M1_C
V-ATPase_G_2
Motif
Other DBs
NCBI-GeneID:
108277181
NCBI-ProteinID:
XP_017345162
Ensembl:
ENSIPUG00000003738
UniProt:
W5UCV4
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All DBs
Position
16:16776155..16787375
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AA seq
381 aa
AA seq
DB search
MDRFMWTNGLLEMNETLVIHQRGVRLYDGDDKAKLDVGVVLLSTHRLIWRDQKNHECCIC
IPLSQIIFFEEQAAGIGKSAKIVIHLHPAPANREPGPYQNSKFSYIKLSFKEHGQIEFYR
RLTEEITQRRWENTPVSQPITPAGLKTGRTRAVGIVGIERKLEEKRKETDKNISEAFEDL
SKLMEKAKEMVELSRSIANKIKDKQGDITEDETIRFKSYLLSMGIANPVTRETHGSGTHY
HMQLAKQLGDILLAPLEERGGMMALTEVYCLVNRARGMELLSPEDMVNACKLFESLKLPL
RLRVFDSGVMVVQLQSHSEEEMITSAIDNVSEKGSLTAEEFAKLLGLSVLLAKERLLLAE
KMGHLCRDDSVEGLRFYPNLF
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atggatcgattcatgtggaccaacggactccttgaaatgaatgaaactttagtaatccat
cagaggggtgtcagattatatgacggagacgacaaggcgaagctcgatgtaggagtggtc
ctcttgagcacacatcggttaatttggagggatcaaaagaatcatgagtgctgtatatgt
ataccgttgtctcagatcatattctttgaggagcaggctgcaggaattgggaagagtgcc
aagatagtcattcacctgcatccagctcctgctaatagagagcctgggccataccagaac
agcaagttctcctacattaaattatcctttaaggaacatgggcaaattgagttttacaga
cgtctcacagaggaaattacacagaggaggtgggagaatacgccagtgtcccagcccata
acaccagcaggactaaagacaggaagaacacgcgcagttgggattgttggcattgagcgg
aagctggaggagaagaggaaagagacagacaaaaacatttcagaggcgtttgaagatctc
agcaagcttatggagaaggctaaagagatggttgagctttccagatccattgctaacaaa
atcaaagacaaacaaggggacatcactgaggacgagactatccgcttcaagtcgtatttg
ttgagcatgggcatcgccaaccccgtaaccagggaaacacacggctcaggcacacactac
cacatgcagcttgctaaacagctgggagacatactgctggcaccactggaggagcgaggg
ggtatgatggccctcacggaggtctactgtctagtaaaccgagcacgagggatggagctt
ctttctcctgaggacatggtcaatgcctgcaaattgttcgagtctctgaaactccctctc
aggttgcgagtgttcgacagtggcgtaatggtggttcagcttcaatctcacagtgaagaa
gagatgattacatctgctatcgataatgtgtctgagaagggctccttaacagcagaggag
tttgctaaacttttaggactgtctgttcttcttgcaaaagagagactgctgctggctgag
aaaatggggcatctatgcagagacgactctgtggaaggcttgcgtttttatcccaacttg
ttctga
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