Ictalurus punctatus (channel catfish): 108277297
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Entry
108277297 CDS
T04658
Symbol
smarcad1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1b isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108277297 (smarcad1b)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
108277297 (smarcad1b)
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
DEAD
HHH_3
T2SSK
Motif
Other DBs
NCBI-GeneID:
108277297
NCBI-ProteinID:
XP_017345385
Ensembl:
ENSIPUG00000022817
UniProt:
A0A2D0SSB0
LinkDB
All DBs
Position
16:23480856..23500361
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AA seq
922 aa
AA seq
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MRNKEPEILADCTDNTIPETPEAKRPCKPSAARASDPVLVDSSSDSDVEISGISMGPRKI
TATSTQDTILFSDEEDEVTEVKMETSHHEGRETKLEHPSSLKTSGNGDTVGKRRQEEMCD
DSQESNKSSKKRRESLTDDSADEGPEPSWKEQESMVKKLQRNFPHLNKEELRDVLHEHSW
VIEDALEALRMFSEHVVEFSSDDSDSEPPPSPEHKNTNPTPIPSTSATQQVPHRPLNGDR
DTRMRRRRHTKEIQKRDSSSEDDASDFEASPRPLDLDSDSDETDEKLPKLKAEILGFFQK
ATVDELTLIAGCSLKKAQKIIELRPYKMWNDLDDVLHRGNGLSAELLTGCREVLREREVV
QGLMVRCEDISRKMAEWVQKGLGSMTQPHILNSTFQLKPYQLIGLSWLTLLHKNQLSGIL
ADEMGLGKTIQVISFLAHLYQEGNRGPHLITVPSSTLDNWVRELNLWCPSLKVLVYYGSV
EERKCIRYEILNEEVDYNIIVSTYNLAIGNSNDRSLFRKLKLEYAVFDEGHMLKNMSSLR
YRHLMGINAKYRLLLTGTPLQNNLLELMSLLNFIMPNMFSSSTSQIAKMFSMKSSEEQSS
FEKDRIAHAKLIMKPFILRRIKSEVLKQLPAKEEQIEFCAMSERQQQLYDALFSKLKCSS
NTEKRELTNVMMQLRKMANHPLLHRQYYSSSLLSAMSRLMLKEPSHRDSDPVLIEEDMAV
MSDFELHRLCLQYPALQEHQLTTEQLLDSGKLHLLTPLLTDLKEQGHRVALFSQFTMMLD
ILEVLLKHHKHRYIRMDGSTPMSDRIVLIDQFNTDLDIFVFLLSTRAGGLGINLTSANVV
ILHDIDCNPYNDKQAEDRCHRVGQTRNVKVMKLISKDSIEDAMLRIGQRKLKLEQDMTAT
EEGDEDTIPDDMASLLKASLGL
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atgaggaacaaagaacccgaaattcttgcggattgtaccgacaacacaataccagaaact
cctgaggccaagcgtccgtgtaaacccagtgctgccagagcctccgatcctgtactggtg
gactcgtcctccgattcggatgtggagatatcagggatctcaatggggccgaggaagatt
actgcgacgtcgactcaggacacgatcttgttctctgacgaagaggacgaagtaacagag
gtgaagatggagacgtcgcaccacgaaggacgggagaccaaacttgaacatccttcatcg
ttgaagacgtctggaaacggagatacagtgggtaaaaggaggcaggaggagatgtgtgat
gattcccaggagagtaacaaaagtagcaagaagaggcgcgagtcactgacggatgattcg
gcagatgagggacctgagcccagctggaaggagcaggagagcatggtgaagaagctgcag
cgtaatttcccccatctcaacaaggaggagctcagggacgtgcttcatgaacacagctgg
gtcatcgaggacgccctggaggcactgcgcatgttctctgagcacgtggtggagttcagc
agcgatgactcggactcagaaccgcctccatctcccgaacacaaaaacacaaatccgact
ccgatccccagcacgtccgcaacgcagcaggtaccccacagacccctaaacggagacaga
gacacacggatgaggaggagacggcacacgaaagaaatccagaagcgagacagcagctca
gaagacgacgctagcgacttcgaggcgtcacccagacccttagacttggactccgattcg
gatgagaccgacgagaagcttcctaaactaaaggctgagatcctgggcttcttccagaag
gccacggtcgacgagctgacgctgatcgctggctgctctctgaagaaggctcagaaaatc
atcgagctgagaccgtataaaatgtggaacgatctggacgacgtcctgcacagaggtaac
ggcctctctgcggagctgctcaccgggtgtcgggaggtcctccgggagagagaggtggta
cagggtctcatggtcaggtgtgaggacatttctagaaagatggccgaatgggtgcagaag
ggactgggatctatgacgcagccacacatccttaacagcacgttccagctgaaaccgtac
cagttgattggcctcagctggctgaccttgcttcacaagaaccagctgagtgggatcctg
gcagatgagatgggtttggggaagaccatccaagtcatctcgtttctggcgcacttgtat
caggaggggaaccgagggccgcatctcatcaccgtgccttcatccacactcgataactgg
gttcgagagctgaacctctggtgcccgagcttaaaagtgctggtttactacggttctgtc
gaggaacgcaagtgcatccgctatgagatcctgaacgaagaggtggactataacatcatc
gtctcaacatataacctggccattgggaactccaacgatcgcagcctgttccgtaagctc
aagctggaatacgccgtgtttgatgaaggacacatgctgaagaacatgagctcgctgcgc
tatcgccaccttatgggcatcaatgccaaatatcggctgctgctgactggaacgccgctg
cagaataatctactagagctgatgtctctgcttaacttcatcatgccgaacatgttctcc
agcagcacctcgcagatcgccaagatgttctccatgaaatcctcagaggagcagagcagc
tttgagaaggaccggattgctcacgccaaactcattatgaagccgttcatcctgcggcgt
atcaaaagcgaggtcctgaagcagctgcctgccaaggaggagcagatcgagttctgcgcc
atgagcgagagacaacagcagctttatgacgcgctgttcagcaagctaaagtgctccagc
aacacagagaaacgggaactgaccaatgtcatgatgcagctgaggaagatggccaatcac
ccgctcctgcaccgacagtattactccagcagtctcctctcggccatgagcagactcatg
ctcaaggagccgagtcaccgtgactcggacccggttctgatcgaggaagacatggcggtg
atgtcagacttcgagctgcatcgtctgtgcctgcagtaccctgcgctacaagagcatcag
ctgaccacagagcaactgctggactcggggaagctccacctcctcacaccccttctgacg
gacctcaaagaacagggtcaccgagtggcccttttcagccagtttaccatgatgctggac
atcctggaggtgctgctcaaacaccacaagcacaggtacatccgaatggacggctccacg
ccaatgagtgaccggatcgtgctgatcgaccagttcaacacggacctcgacatctttgtg
ttcctgctgtccactagagctggaggactcggcatcaacctgacctccgcgaacgtcgtc
atcctgcacgacatcgactgcaatccgtacaacgacaagcaggcagaggaccggtgtcac
cgcgtcggacaaaccaggaatgttaaggtgatgaagctgataagcaaagactctatagag
gacgccatgctccgcatcggccagaggaaactcaaactagagcaggacatgaccgccact
gaagaaggtgacgaggacaccattccggatgatatggcctctctcctgaaagcttcattg
ggactctga
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