Ictalurus punctatus (channel catfish): 108277387
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Entry
108277387 CDS
T04658
Symbol
ddx4
Name
(RefSeq) probable ATP-dependent RNA helicase DDX4
KO
K13982
probable ATP-dependent RNA helicase DDX4 [EC:
5.6.2.7
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ipu03036
]
108277387 (ddx4)
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108277387 (ddx4)
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Gene silencing
piRNA pathway
108277387 (ddx4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108277387
NCBI-ProteinID:
NP_001316240
Ensembl:
ENSIPUG00000001845
UniProt:
A0A0B5CWB0
LinkDB
All DBs
Position
16:18609034..18624750
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AA seq
666 aa
AA seq
DB search
MENWEDDQSPVVSNVTFGNAANSWNSGSQHNSFKSMTYDEESSWKSDSSGFGTQGGNRGR
GSRGGGGGFRSFNSGYDNHGNAEVDRAISWNGGRDGFIGRGGREGDENDSHDSFKSGRGG
RGGRGGRGAFQQGSDGEGIQQGSDGEGRRHLGGGGGYRGRDEEVFSKGSQKGDKEKGDGE
TAGPKVNYVPPPPPEEVDSIFSQYATGINFDKYDDILVDVSGSDPPKAIMTFEEAQLCET
LNRNVAKTGYVKPTPVQKHGIPIISAGRDLMACAQTGSGKTAAFLLPILQRLMNDGAAAS
KFSEVQEPEVIIVAPTRELINQIYLEARKFAYGTCVRPVVVYGGTSTGFAIREVLKGCNV
LCGTPGRLLDVIGRGKVGLSKILYLVLDEADRMLDMGFEPDMRKLVNSPGMPPKEERQTL
MFSATYPEDIQRLAADFLKVDYLFLAVGVVGGACSDVEQHIIQVTQYSKREQLLDLLKAT
GTERTMVFVETKRSADFIATFLCQEKVPTTSIHGDREQREREKALSDFRTGRCPVLVATS
VAARGLDIEHVQHVVNFDLPKSIDEYVHRIGRTGRCGNTGKAVSFFDPAPDTPLARSLVK
VLSGAQQEVPSWLEEIAFSAHGTTGFNPRGNVFASCDSRRGGSFMKNQAPQPPAQSTTAE
ADEDWE
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggagaactgggaagatgatcagagccctgtcgtgagcaacgtgacttttgggaatgct
gcgaactcatggaacagtggcagccaacacaacagcttcaaaagcatgacttacgatgag
gaaagttcttggaaaagtgacagcagtggttttgggactcaaggtggaaacaggggtcga
ggctctaggggaggaggtggaggcttcaggagcttcaattcaggatatgataaccatgga
aacgcagaagttgatcgggccatctcatggaacggtgggcgagacgggttcatcgggaga
ggaggcagagaaggtgatgaaaatgacagtcatgacagtttcaaaagtggcagaggtggg
cgtgggggaagaggaggtcgtggagctttccaacaaggtagtgatggagaaggcatccaa
caaggtagtgatggagaaggcagaagacacttgggcggaggtggaggatatagaggaagg
gatgaggaggtgttttctaagggctcacagaagggtgacaaggaaaaaggagatggtgag
actgcagggcccaaggtcaactatgtaccgcctccaccaccagaagaagtggactccatt
ttttcccagtatgcaacaggcatcaactttgacaagtatgatgacatacttgtggatgta
agcggaagtgacccgcccaaagcaatcatgacctttgaagaagcacaactttgtgagact
cttaacagaaatgttgccaagacaggatacgtgaaacctactcccgttcagaagcatggc
attcccatcatatctgccggaagggatctcatggcttgtgcccagactggatctggcaaa
acggccgccttcctgctgcctattcttcagcgtctcatgaacgacggtgcagcagccagc
aagttcagtgaggttcaggagcctgaagtaatcatcgtggctcccaccagggaactcatt
aatcagatttacctagaggctcgcaagtttgcttatggcacttgtgttcgtcctgtcgtc
gtttatggaggcacgagcactggatttgcaatccgagaagtgttaaaaggttgtaacgtg
ttgtgtgggacccctggaagattgctcgacgttattggtcgtggaaaggttggactgagt
aaaattctttatttggtgctggatgaagctgaccgaatgttggacatgggctttgagccg
gacatgcgaaagctggtgaactctccgggaatgcctccgaaagaagagcgccaaaccctc
atgttcagtgccacgtatccagaggatattcaaaggctggcagctgatttcctcaaggtg
gattatttgtttctggctgtgggagtggtgggaggagcctgcagcgacgtggagcagcac
atcattcaagtcactcagtattcgaagagagagcagctgctggacctgttgaaggccaca
gggacggagagaacaatggtctttgttgaaaccaaaagaagtgcagatttcattgcaacg
tttctctgtcaggagaaagtgcccactactagcatccatggcgatcgggaacagcgagag
cgggagaaagctctcagcgacttccgcactggccggtgtcctgtgctagtggctacttct
gttgctgctagaggactagacattgagcatgtccagcatgtggtgaactttgacctgcca
aaaagcattgatgagtatgtgcaccgcatcgggagaacaggccgatgtggaaacacagga
aaagccgtgtccttttttgacccggcgcctgatactcctctagctcgctctctggtcaaa
gtcctctcaggggcccagcaggaagttccttcatggctggaggaaattgcattcagcgct
catggcaccaccgggttcaacccacgtgggaacgtgtttgcctcctgtgacagtcgcagg
ggtggctccttcatgaagaaccaggcaccacaaccacctgcacagagcaccactgcagaa
gctgatgaagactgggagtag
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