Ictalurus punctatus (channel catfish): 108277409
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Entry
108277409 CDS
T04658
Name
(RefSeq) PDZ and LIM domain protein 7 isoform X1
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
108277409
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
108277409
Domain-containing proteins not elsewhere classified [BR:
ipu04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
108277409
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Gene cluster
GFIT
Motif
Pfam:
LIM
PDZ
PDZ_6
Motif
Other DBs
NCBI-GeneID:
108277409
NCBI-ProteinID:
XP_017345644
Ensembl:
ENSIPUG00000016370
UniProt:
W5UJV3
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All DBs
Position
2:17344426..17389391
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AA seq
430 aa
AA seq
DB search
MNVYSVTLSGPAPWGFRLQGGKDFSMPLTVSRLTPGGKAAHAGVGVGDSVVSIEDSNAEE
MTHVEAQNKIRGASDSLTLTLSRAFQSGGEQKGSLAAAPTQPKYSFTPSTTINKMARPFS
ASSNNSSSGPIIKPVAYASKLNTNAPNASMSVSGSTPPSQNGHGVTPCPSKPAAKPEGAR
APPLQSSTTSGPSSRPPWVTDPNFAERYRPDKTSTVVTQHRQPAQPTPEQNRSSILQAAQ
QNPESDSGSGRTPLCAACNKIIRGRYVVALGRSWHPEEFTCCQCREVLDEGGFFEEKGSV
YCTKCYDNRYAPNCAKCKKKIAGEIMHALKMTYHVQCFMCAACKRPIRNQAFYMEDGEPY
CERDYEKMFGTKCHGCDFKIDAGDRFLEALGYSWHDTCFVCALCHVNLEGKTFYSKKDKP
LCKGHAFSPL
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaacgtttacagcgtgacgctcagcgggccggcgccgtggggcttccgactccaggga
gggaaggatttcagcatgcctctcacagtgtccaggctgactcccgggggaaaggcagct
cacgccggagtcggagtgggagacagtgtggtgtccatcgaagactccaacgctgaggag
atgacacacgttgaggcacaaaacaagatccgaggcgcatctgactccctcactctgaca
ctcagcagagctttccagtctggaggtgaacagaagggatcgcttgctgctgcacccact
cagcctaagtactccttcacgcccagcactaccataaacaagatggcgcggcctttctcc
gcctcctctaataactccagctctgggcccatcatcaaaccagtggcatacgcttccaag
cttaacaccaacgcacctaacgccagcatgtcggtgtcgggcagcacgcccccctctcag
aacggccatggagtgactccgtgccccagcaaacctgcagcgaagcccgaaggagctcga
gctccacctcttcaatcttccaccacgtctggaccttcaagccggccaccttgggtgaca
gacccgaactttgccgagcgctatcggccagataagacgagcacggtggtgacgcaacac
aggcagccggcacagcccacacccgagcaaaaccgcagctccatcctccaggccgcgcag
cagaacccagagtccgactccggctccggacgcacgccactctgcgccgcatgcaacaag
atcatcagaggtcgctacgtggtggctctgggccgctcctggcaccctgaggagttcacg
tgctgtcaatgccgagaagtgctcgacgaaggcggcttctttgaggagaaaggctccgtt
tattgcaccaaatgctacgacaaccgttacgccccaaactgcgccaagtgcaagaagaag
attgccggagagatcatgcacgccctgaagatgacctatcacgtccagtgcttcatgtgc
gccgcctgcaagaggcccatcaggaaccaggccttctacatggaagatggcgagccttac
tgcgagagagactatgaaaagatgtttggtactaaatgtcatggctgtgacttcaagatc
gatgccggcgaccgcttcctggaagctctaggctacagctggcacgacacgtgcttcgtc
tgtgcgctttgccacgtcaacctggagggcaagacgttctactcaaagaaggataagcct
ttgtgtaaaggtcacgccttctctccactttga
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