Ictalurus punctatus (channel catfish): 108277525
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Entry
108277525 CDS
T04658
Name
(RefSeq) neuronal PAS domain-containing protein 1 isoform X2
KO
K09098
neuronal PAS domain-containing protein 1/3
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ipu03000
]
108277525
Transcription factors [BR:
ipu03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
Factors with PAS domain
108277525
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
PAS_3
bHLH_HIF1A
PAS
PAS_11
PAS_4
PAS_9
HLH
Motif
Other DBs
NCBI-GeneID:
108277525
NCBI-ProteinID:
XP_017345840
UniProt:
A0A2D0SU50
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Position
17:16254443..16296140
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AA seq
765 aa
AA seq
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MAAMPFVSEGKCVSVEWDFLQGLLAKPPTLPCLQNLRKEKSRNAARSRRGKENFEFFELA
KMLPLPGAITSQLDKASVIRLTISYLHMRHFASQGDPPWSPLLEGDNNCNKVRRNSHSLA
TDIFEQHLGAHLLQSLDGFVFVVSQEGRFLYISETVSIYLGLSQVELTGSSVFDYIHPAD
HVEMAERLGIKPHLRTEAGCQTAQESASSSASTSSLAGTPEPAPSSPLSSGDEPVERGFF
VRMKSTLTKRGLHVKSSGYKVIHVTGRIRCRPALVPGSSRSLHRPLGLVALAHTLPPSTL
NEVRMESHMFVFRVNMDLQITYCENRISEYMDLSPAEVVGHTCYHFIHVEDLDTIRQSHE
DLLRKGQVVTGYYRWLQRRGGYLWVQSCATVSINHKAPHERNVIWVNYILSRTEMPDMPL
DLLQLPETLKAERLRASSSTRDISPKSHGPNGAQPTKGGVGRNESERKGRDSCTHITANH
SDNRRKRPYHSSPENTPPQTRRQQLEVFRHREDSLSGSSDSASDSEAEEDEEEDKEEEWE
HNGKRLKTDVGASKKNSETGKVRNGRAVIQQLKSVVTSTSSSNVKTEQEMLSTGVCSTTG
GRWSNTQSARGINGSSPPSQDSESVTTEAPAKGLFSPPSPISASPLPREDRLHGGRTPDY
ELLQRLAAGGAAGRVLFHPLALGPPGPQSLYAPSTIRYAPPELPTAHAEGPRLDHAPKSP
TFFPHLQRIAALPPFSGFSPSEPPFAPSLPFCMNGLRGAAGTDED
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggcagccatgccgttcgtcagtgagggaaagtgtgttagtgtggagtgggacttcctg
caaggactcctcgctaaaccgcccactttgccctgtttacaaaacctgcggaaggagaag
tcccgaaatgcggctcgctcacgacgcggtaaagagaactttgagttttttgaactggcc
aaaatgctgcctctccctggcgccatcaccagccagctggacaaggcctcggtcatccgc
ctaaccatcagctacctgcacatgaggcattttgccagtcagggagacccaccctggagc
cccctgctggagggggacaataactgcaacaaggtgcggagaaacagtcactcactggcc
actgatatatttgagcagcacctgggagcacatctactacagtctctggatgggtttgtg
ttcgtggtcagtcaagaaggccgtttcctctacatttctgagacagtgtcgatctacttg
ggcctctcacaggtggaattaacaggcagtagtgtgtttgactacatacatcctgcagac
catgtggagatggcagagcgattgggaattaaaccacacctccgcacagaggcaggctgt
cagactgcccaggaaagtgcttcaagttctgcctccacatcctcattggctggcacacct
gaaccagccccctccagtccgctgtcatccggagatgaaccagtagagcgaggtttcttt
gtccgaatgaaatccacccttactaagcgcggcctacatgtcaaatcctctggttataag
gtgatccatgttactggccggattcgctgtcggccagccctggtcccaggctcttcacgc
tcactccatcggccactgggattggtcgctcttgctcacacacttccaccctccacgctt
aatgaggtgcgcatggagagtcacatgttcgtgtttcgggtcaacatggatctccagatc
acctactgcgagaacaggatctcagaatatatggacttgagcccagctgaggtggtgggg
catacctgctaccacttcatccatgtggaagacctagataccatccggcaaagccacgaa
gacttgctgaggaagggtcaggttgtgactggttactaccgctggctgcagaggagaggc
gggtatttgtgggttcagtcgtgtgccactgtgtccatcaaccacaaagcaccccatgaa
cgtaacgtcatctgggtcaactacatactcagtcggacagaaatgcctgacatgccactg
gatttactacagctcccagaaaccctgaaagctgagcgtcttcgggcaagctcttccact
cgtgatatctctccaaagtcacatggcccgaatggtgcccagccgacgaagggcggagtt
ggacgaaatgagtctgagcgcaaagggagagactcttgcactcacattactgctaaccat
tcagataacaggaggaagaggccttaccactccagccctgaaaacacacctccacaaaca
aggagacaacaactcgaggtcttccggcatagagaggacagcctgtcaggctcctcggac
tcagccagtgacagtgaagctgaagaagacgaagaggaggacaaggaagaggagtgggag
cacaatggcaagagactgaagaccgatgtgggagcctctaagaagaacagtgaaactggg
aaagtgcgtaatggtcgtgctgtaatccagcagctgaagagtgtggtgaccagcacctcc
agctctaatgttaaaactgagcaggagatgttgagcactggagtttgttcaaccactgga
gggcgatggagcaacactcagtccgccaggggtataaatggaagcagccccccatcccaa
gattccgagtcagtcactacagaagctccagctaaaggtctcttcagccctccttcaccc
atctcagcttcacccctgcctagggaggatcgcctccacggaggccgcacgcctgattac
gagcttcttcagagactagctgcgggtggagcagccgggcgtgtactgttccaccctctt
gctctcggccctccagggcctcagagcctttacgctccaagcaccattcgctacgcccct
ccggagctgcccactgcccatgctgaggggccacgcctggaccacgcgcccaaatcgccc
actttctttccacacctgcagagaatcgctgctctaccacccttcagcggcttctcacct
tcagagcctcccttcgctccatcccttcccttctgcatgaacggactgagaggagcagca
gggacagatgaggactga
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