KEGG   Ictalurus punctatus (channel catfish): 108277693
Entry
108277693         CDS       T04658                                 
Symbol
col4a4
Name
(RefSeq) collagen alpha-4(IV) chain
  KO
K06237  collagen type IV alpha
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu04382  Cornified envelope formation
ipu04510  Focal adhesion
ipu04512  ECM-receptor interaction
ipu04518  Integrin signaling
ipu04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    108277693 (col4a4)
   04518 Integrin signaling
    108277693 (col4a4)
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    108277693 (col4a4)
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    108277693 (col4a4)
 09150 Organismal Systems
  09158 Development and regeneration
   04382 Cornified envelope formation
    108277693 (col4a4)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:ipu04147]
    108277693 (col4a4)
   00536 Glycosaminoglycan binding proteins [BR:ipu00536]
    108277693 (col4a4)
Exosome [BR:ipu04147]
 Exosomal proteins
  Exosomal proteins of other cancer cells
   108277693 (col4a4)
Glycosaminoglycan binding proteins [BR:ipu00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   108277693 (col4a4)
SSDB
Motif
Pfam: Collagen C4
Other DBs
NCBI-GeneID: 108277693
NCBI-ProteinID: XP_017346002
Ensembl: ENSIPUG00000001529
UniProt: A0A2D0STI6
LinkDB
Position
17:3744407..3799371
AA seq 1663 aa
MTRPHRIASLSLPLWWLLLTRVYRQEAQGVEISQDCGQRNTSLCPCIPIKGSRGPPGALG
EDGRMGAPGPQGPQGQRGQKGQRGSEGIPGVPGIKGDVGTPGIPGVPGIKGDVGPRGHVG
PPGLPGLDGCEGTRGDPGPAGRPGPNGVIGPRGHPGPKGPKGVSACRYLRVPGQPGCNGP
PGDPGPRGLPGPCGPQGPQGNPGDPGLPGGNGAPGVRGVPGDTGKLIPGDSGDEGDPGPK
GDPGPTELVEPPQELFPKGDKGSKGPDGPRGLPGYKGNDGSVGETGEKGVAGWPGPTGES
GYPGHSGRQGIQGEQGMPGLCGESGSPGLKGISGDPGPRGQTTYFFYEAGCVGERGSPGA
PGVKGDMGLIGLPGPTGQTGISIPGTPGWPGMVGPQGLQGEKGAPGKRSTEQIPGEPGKP
GLQGPKGIQGDPGPTGYSCIPGQRGVPGITGDKGPSGSKGNEGKQGDSGDCVCAVRILNG
VKGFPGEPGEPGAPGLQGLPGARGETGPDGEPGLIGHFGYPGFPGFRGLKGEKGNLFVMN
VKGQKGLAGTPGTEGNPGTNGRCGDHGNPGPPGDCGPEGESFTGLPGDRGCPGNMGFKGA
RGPCGPQGSGIPGSVGHRGHEGDQGPPGQRGNVGRKGNKGDMQVCIPGSPGVRGPKGELG
DQGCLGEEGNPGPCGDQGINGPKGEKGNLGNPGPNGPAGLCGSQGDPGDCGPVGKSLHGE
PGIPGNTGPTGLQGCIGDSLVGERGPVGPSGLTGSLGPKGVPGAPGSLGREGSPGVPGAR
GSKGEPGANGQPGKEGSAGPCAVQCPVGTLGNPGLPGDPGCNGNPGERGEKGCTGPPGIP
GRGLKGDTGRPGPPGARGYCGPQGCQGSEGQSGDPGPNGLKGHPGQPGWDGLSGGPGECG
CQGPPGVKGEKGFDGRQGCTGVNGEEGEKGSHGNPGMPGEINVNAEKGKKGESGMPGQCG
LPGLRGDKGEKGEHGPDGFSGYLGLPGSENGPRGPQGLFGRPGGPGRQGLPGLKGNSGFT
GECGDPGDPGLSGSPGVPGFSGFDGLKGDRGDSIGTPGPPGLRGPSGQNGFPGSPGDEGD
EGEEGLPGQCGQHGKPGAVGNRGHCGPQGVIGPAGPRGKCGAEGPSGPPGPPGPPGPSGH
NGPKGCQGPPGLHGLDGLEGVNGEPGARGLGVPGDRGPDGLTGEKGCSGDPGPHGPIQQG
VKGYHGPPGLPGNPGCPGPQGLPGSDCGNPKGGQSGETGFMGGDGPSGPRGPMGPAGLAI
PVLGDEGDPGTHGPPGCKGQIGDRGPNGQVGVSGLHGQKGEQGDPGLIGDPGPSGLPGEN
GSPGLRGTKGPQGDQGSPGHVGNIIHRDFSRPIPGPPGLPGPAGESGFPGLTGIQGSGGL
KGTKGLVGDQGLDGEPGPPGHIGLPGDPGPEGARGSPGRQGQQGPPGDEGPPGPSESFSA
GFLLVIHSQSTAVPVCPQDMLKLWEGYSLLYLEGQEKAHSQDLGQVGSCMRVFSTMPFSL
CNQHACNYANRNDKSYWLATTAPLPTRPVSGLDIQPHISRCVVCEAPSPAIAIHSQERLI
PTCPPNWRSLWIGYSFLMHTGSGDEGGGQSLTSPGSCLQDFFTHPFVECQGPQGTCHYFA
NLYNFWLMSFNGEQPDEQPELMTLKEASQQRDYVSRCSVCLRV
NT seq 4992 nt   +upstreamnt  +downstreamnt
atgacacgcccccaccggattgcctcgctcagcctcccactctggtggcttttactgaca
cgtgtgtacagacaggaagctcaaggggttgagatctcccaggactgtggccagcgcaac
accagcttgtgcccctgtattccaataaaaggttccaggggacctcctggtgctttaggg
gaagatggtcgaatgggggctccaggtccacaaggccctcagggacaacgtggacagaaa
ggacaacggggatcggaaggaattcctggggttcctggaataaaaggagatgtaggcact
ccaggaattcctggggttcctggaataaaaggagatgtaggtcctcgtggacatgttggc
cctcccggtcttccaggattagatggctgcgaaggaaccagaggagatccaggacccgct
ggccgtccaggaccaaatggtgtaatcggaccacgaggacacccaggaccaaagggaccg
aaaggagttagtgcatgcagatatttgagggttcctggtcaacctggttgcaatggacct
cctggtgatcctggacctcgaggacttcctggaccttgtggcccacagggtccacagggg
aaccctggagatcctggattaccgggtggaaatggtgctccaggtgtacgaggtgttcca
ggagacacgggaaaactgattcctggtgatagtggagatgagggagatccagggccaaag
ggtgatccagggcccactgaattggttgagccaccacaagaattgttccccaaaggagac
aaggggtcaaaaggacctgacggaccccgtggattgcctggatataagggaaatgacgga
tctgtgggggaaacgggagagaaaggtgtcgcaggttggccaggacctacaggagaatct
ggctatcctgggcattctggcagacaaggaattcagggtgaacaaggaatgcctggactc
tgtggtgaaagtggctccccaggactgaagggaatctcgggtgatcctggaccaagaggg
caaacaacatatttcttttatgaagcaggttgtgttggtgaacgaggatctcctggggcc
cctggtgtcaaaggagacatgggattgataggtctgccaggccctactggtcaaacagga
atatctataccaggaaccccaggctggccagggatggttggtcctcaaggccttcaaggt
gaaaaaggagcgccaggaaagagaagcactgagcagatcccaggggaacctgggaaacca
gggctccaagggccaaaagggattcaaggggatcccggacccactggatactcctgcatc
cctggccaaagaggagttcctggaatcacaggagataaaggtccatctggttctaaaggc
aatgaagggaaacaaggtgacagtggtgactgtgtttgtgcggtcagaattttaaacggc
gttaagggtttcccgggtgaacctggcgaacccggtgctccaggactgcaggggcttcct
ggtgcacgaggtgaaactggccctgatggagaacctgggctgataggacattttggttat
ccgggttttccaggtttcagggggctaaaaggagaaaaaggaaacctgtttgtgatgaat
gtcaagggtcaaaagggactggccggcacaccagggactgagggcaatccgggaaccaat
ggcaggtgtggggatcatgggaatcctggtcctccaggagattgtggtccagagggtgaa
agttttacaggtcttcctggtgatcgaggttgtccaggaaatatgggtttcaaaggtgca
agaggtccctgtggaccacaaggctcaggcattcctgggtcagtaggtcatcgaggacat
gaaggtgaccagggacctccaggacagagaggaaatgttgggcgtaaaggaaacaaaggt
gatatgcaagtctgtatacctggcagtcctggagtccgtggaccaaagggagagcttggt
gaccaaggctgcttaggagaggagggcaatccagggccttgtggggatcagggaataaat
ggaccaaagggagagaaaggaaaccttggaaatcctggtcctaatggccctgcagggtta
tgtggatctcagggggatccaggagactgtggacctgtcggaaagagtttgcatggggaa
ccagggatacccggcaatactgggcccactgggttacaaggatgcattggagactcattg
gtaggagagcgagggccagtgggccctagtgggctcactggctctttaggacctaaagga
gtccctggagccccagggtcacttggtagagaaggctctcctggtgtacctggagctcga
ggtagtaaaggagagccaggagcaaatggtcagcctgggaaagaggggtctgcaggccca
tgtgcagtacagtgtccagttggaacactggggaacccaggacttccaggagacccaggc
tgtaatggaaatccaggcgaacgtggtgagaagggatgtaccggaccacctggcattcct
ggaagggggctgaaaggtgatactgggagaccaggcccacctggtgctcggggatactgt
ggtcctcagggatgtcaaggatcagaaggacagtctggagatcctggtccaaatggattg
aaaggtcatcctggacaacccgggtgggacggcttatctggtggccctggtgagtgtgga
tgtcaaggaccacctggcgtgaaaggcgagaaaggctttgacgggagacaaggttgtact
ggcgtaaatggagaggaaggagagaaaggttcccatggaaatcctgggatgccaggagag
attaacgtgaatgctgaaaaggggaagaagggggagtcaggaatgcctgggcagtgtgga
ctccctggtctccgaggcgataaaggtgagaagggtgaacacggcccagatggcttttca
gggtatcttggacttccaggttctgagaacggccctcgaggaccacaaggtctttttgga
aggccaggtggacctggacgccagggcttaccagggttaaaaggcaatagcggatttact
ggagaatgtggagatccaggtgacccagggttgagtggatctccaggagtcccaggtttc
tctggatttgatgggctgaaaggtgatagaggagattccataggtacaccaggacctcca
ggtctgagaggtccatctggacaaaatggcttcccaggttctcctggagatgagggagat
gagggagaggagggtctgcctggtcagtgtggacagcatggcaaacctggtgctgttgga
aatcgaggacactgtggaccccaaggtgttattggtcctgcgggacccagaggaaaatgt
ggtgccgaaggtccttcagggcctcctggacctcctggacctcctggaccatcaggccac
aatggcccaaaaggttgtcaagggccaccgggactgcatggactggatggattagagggt
gtgaatggtgaaccaggggcacgcggactaggtgtacctggggatagggggcctgatggt
ctgacaggtgaaaagggttgttcaggagaccctgggccacatggtcctatccagcaaggg
gtcaaaggctatcacggcccacctggattgccaggtaatcctggttgtcctggtcctcaa
ggtcttcctggctcggactgtgggaaccctaaaggaggacagagtggtgaaacaggtttt
atgggtggcgacggcccatcaggacctagggggcccatgggaccggcaggcctggcaata
cctgtgctgggggatgagggggacccaggtacacatggtcctcctggatgtaaaggacaa
ataggtgatcgtggtcccaatggccaggtcggggtttcaggcctccatggacagaaaggt
gagcaaggagacccagggcttattggagatcctggaccttctggcttaccaggagaaaat
ggcagccccgggctcaggggcactaaaggaccacaaggagaccaaggttctcctggacat
gtagggaatattattcatagggatttcagcaggccgattccaggtccacctggacttcct
ggacctgctggtgaatctggctttccaggacttacaggaattcagggaagtggaggtcta
aaaggtacaaaaggcctagtgggagatcaagggttggatggtgaacccggaccacctggc
catatcggacttcctggagaccctggaccggagggtgccagaggttcaccaggcaggcaa
ggccaacaaggacctccaggagatgaaggtcctcccggcccttctgagagtttcagcgca
ggcttcctattggtcatccacagccaatcaacagctgtacctgtttgtcctcaagatatg
ttaaagttgtgggagggatacagcctactgtaccttgaggggcaagagaaagcacactcg
caagacctgggtcaggtagggtcgtgtatgcgtgtcttcagcactatgcccttttcactc
tgcaaccagcatgcctgcaactatgccaaccgcaatgacaaatcctattggcttgccacc
actgctccattacccacaaggcccgtgtctgggctggacatccagccacacatcagcagg
tgtgtggtgtgtgaggctccatcaccggccattgccattcacagccaggaaagactcata
cccacgtgtccgccgaattggaggagcctctggattggatattctttccttatgcacacc
gggtcaggagatgaaggaggcggccagtctctcacatcgccaggaagctgcctacaggat
ttcttcacacatccattcgtggaatgccagggcccacaagggacatgccactatttcgcc
aacctctacaacttttggctcatgagtttcaatggcgagcaaccagatgagcaaccagaa
ctgatgaccttaaaagaagcgagccagcagcgtgattacgttagccgatgcagtgtctgc
ctgagggtgtga

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