Ictalurus punctatus (channel catfish): 108277694
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Entry
108277694 CDS
T04658
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04382
Cornified envelope formation
ipu04510
Focal adhesion
ipu04512
ECM-receptor interaction
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
108277694 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
108277694 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
108277694 (col4a3)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
108277694 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ipu04147
]
108277694 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
ipu00536
]
108277694 (col4a3)
Exosome [BR:
ipu04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
108277694 (col4a3)
Glycosaminoglycan binding proteins [BR:
ipu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
108277694 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
108277694
NCBI-ProteinID:
XP_017346004
Ensembl:
ENSIPUG00000001563
UniProt:
A0A2D0STI7
LinkDB
All DBs
Position
17:complement(3700539..3744338)
Genome browser
AA seq
1656 aa
AA seq
DB search
MRATPVGILFLGFVTLAHTEECGVNRKPECDCSVVKGEKGEQGFPGLIGSQGEDGFSGDE
GQPGPPGFMGDPGIPGFPGPKGSRGLPGKPGSWGPAGIPGLPGDEGPQGPPGSPGCNGTK
GERGSPGLPGLPGSVGLQGENGPPGPKGDTDSFPYPEDVIGEKGLPGRDGPKGEPGQPGD
CGPMGPMGRVGLEGKRGYPGIPGEKGVEGPRMIGPRGAKGVRGFPGIPGERGIKLFHEVH
RELKGEPGDPGHRGSPGIAGDRGLCGPKGEKGCTGDPGPLGEDGANGLEGEYGLNGSPGD
KGYRGPPGIPGLKGEKGDCGCSGPPGDCLPRNTLEKGQRGHKGFPGPPGLTGFQGVSGFP
GKTGVPGLGTPGKSGDRGPPGLSGIKGEKGESASQTVGPIGRDGARGQPGPYGDPGPEGL
LEICNGPPGLRGNKGMQGPVGETGEHGEQGEKGDLCRLCPYSGPTRAHSGPPGIRGPTGK
PGANGISGNKGSMGIKGQEGAPGNPGLVGAPGIQGKQGPKGDPGFVGPGAIGDQGDPGSQ
GLPGKSGQNGIPGRPGFQGPRGDKGNPGPFGAKGNKGESGSKGLPGFLGEMGVQGCPGVG
ATGEAGDKGSFGVRGLPGDPGDPGEKGDPGLVIITPGDPGKCGTKGLKGPPGEPGCLGPK
GLCGQPGPCGIKGENGLSQPGLQGPPGCKGEKGIQGHQGPPGIGEPGCPGPTGQCGIPGL
KGNSGYGNPGPTGRRGPPGEDGTIGPIGESGCNGIAGVFGQAGRAGCPGPRGDTGYDGPP
GVTGPAGVCTSGWPGATGVQGQKGMPGSTGCRGQTGMQGESGYQGQGLPGSAGTFGAPGL
NGQSGPPGLAGTKGLKGNNGMPGCTGPRGNDGPAGEPGCPGPSGSPGCPGPPGSKGMAGS
DGLPGCRGPRGQKGNRGDPGPKGEPQTVYNPGDPGDPGCIGPSGLTGLKGDSGIKGPTGR
CGQHGSQGSPGAPGPPGERGLDGLPGEPGVDGCVGEVGLSGSPGPKGAKGTPGQNGTPGD
PGTPGVNGPKGDKGEPSSPGPGEQGYPGEKGEPGIQGLNGKKGERGCIGPVGIPGSEGIR
GVVGETGLPGQPGSPGFPGEKGLDGQPGPLGRPGPVGPPGCSGSPGDPGPQGLKGNQGSD
GIPGLAGEKGNAGAPGYGPPGPAGVRGKPGCKGEPGAMGETGPPGKCGAVGDPGPCGEPG
PPGPLGNPGAQGLCVDGPKGERGPPGQPGSQGPRGICGPPGQPGLGFKGDKGNTGTSGPR
GVCGCPGDTGPQGIPGYAGSDGYPGPKGETGQKGDTGSRGQRGRDGSHGQPGNQGEKGPK
GPPGVPGADDYYRIMHIPGDRGLPGPPGKTGPPGVTGSPGLKGAIGAPGPKGLPGQDGFP
GLQGLRGQKGSRGLAGLPGDLGFTGEDGQKGSRGLPGPCLTNSARDSFLFTKHSQTQDIP
YCPSGSSKVYSGYSLLFINANKRGHGQDLGTMGSCLQMFSTMPFLFCNSDNVCRYASRND
YSYWLSTGTPMPSDLPSISGDTLAQYVSRCSVCDAPGNVIAFHSQNNTVPSCPIGWRSLW
QGYSYVMQSGVGSEGSGQPLSSPGSCLENFQRIPFIECLGRGTCNYYSDAYSYWLAALDP
SQMFSKPSPRIVKEDYPSIISRCQVCMKEPSCNQSS
NT seq
4971 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgcgacaccagtgggaatattgttcctcggatttgtgacgctcgcgcacaccgag
gaatgtggcgttaacaggaagcccgagtgcgactgcagtgtagtcaaaggagaaaagggt
gagcaaggctttccaggtctgattggatcacaaggggaagatggattttcaggagatgaa
ggccaacctggacccccgggcttcatgggtgacccaggaataccaggttttccaggaccg
aaaggctcacggggactccctgggaagccaggatcctggggtcctgcaggaatacctgga
ctcccaggagatgaaggccctcaaggacctcctggtagcccgggatgcaatggcacaaag
ggtgaacgtggttcacctggattgccaggacttccaggatctgtcggcttacagggtgaa
aatggtccccctggccctaagggagacacagactccttcccatatcctgaagatgtgatt
ggagaaaaaggtttgccaggtagagatgggccaaagggtgagcctggacaaccaggtgac
tgtggaccaatgggaccaatgggacgtgtgggacttgaaggcaaaagaggataccctggc
attccaggagaaaagggtgtagagggacccagaatgattggcccccgaggtgcaaaaggc
gtgagaggttttcctggcatacctggtgagaggggtatcaaactatttcacgaagtacac
agagagctcaaaggagaaccaggggatccgggacacagaggcagccctggaattgcaggc
gatcgaggactttgtggccctaaaggagagaaaggatgcacaggagatccaggacctctg
ggggaagatggggcaaacgggctggagggagagtacggtctgaacggctctcctggtgac
aagggatatagggggcctcctgggatccctggtttaaagggggagaaaggtgactgtggt
tgctctggtcctccgggagactgtcttccacgcaatacactcgagaaaggccaacgagga
cataagggcttccctggacctcctggccttacagggtttcaaggtgtaagtggctttcct
ggaaaaacgggcgttccaggactaggtacacctggaaagtctggggatcgtggtccccca
ggcttaagtggaattaagggtgaaaagggagaatcagcatctcaaacagtaggaccaata
ggacgtgatggagctcggggacaacctggaccttatggtgaccctggtcctgaaggacta
ttagaaatatgtaacggcccaccggggttgagaggaaataaaggcatgcaagggcctgtg
ggtgaaactggagaacatggggaacaaggtgagaaaggagacctctgcagactgtgccct
tattcaggccctacacgtgcacattcagggccacctggtatacgtggtccaactggaaag
ccaggtgctaatggaatatctggcaacaaaggatcaatgggtattaaagggcaggaaggt
gcacctggcaatccgggtttggttggtgctccgggcattcaagggaaacagggaccaaaa
ggagaccctggctttgtaggacctggggctattggggaccaaggtgatccaggatctcag
gggctcccagggaagagtggacagaatgggataccgggaagaccaggatttcaaggccca
aggggagacaagggaaatccgggtccttttggggctaaaggcaataagggcgagtctgga
tcaaagggattaccaggattccttggtgaaatgggagtccagggctgccctggggttgga
gcaacaggggaagctggtgacaagggcagctttggtgtacgtggcctgccaggggatcct
ggagatccaggtgagaaaggtgaccctggtttggtgatcataacacctggagatccaggg
aagtgtggaacaaagggtcttaaaggtccacctggggaaccagggtgtcttggacccaaa
gggttatgtgggcaaccaggaccttgtggtataaaaggcgaaaatggattgtcacaaccg
ggtttacaaggaccacctggttgtaaaggtgaaaaaggcattcaaggtcatcaaggtcca
cctggcattggagaacctggttgtccaggacccacaggacaatgtggaataccagggtta
aagggcaatagtggttatggaaatccagggcccactggcaggcgagggcctccaggggag
gatgggacaattgggcctattggtgaatcgggttgtaatggaatcgctggagtttttgga
caggcagggagagctgggtgcccagggcctaggggtgacacaggatatgatggacctcca
ggggtgactggtccagcaggagtctgtacttctgggtggccaggtgcaacaggagtccaa
ggtcagaaaggaatgcctggaagtacaggatgtcggggtcagacaggtatgcagggtgag
tccggatatcaggggcaaggtttacctggttctgctgggacatttggggcacctggttta
aatggacaatctggtccacctggtctagccggaacaaagggtttgaaggggaataatggc
atgcctggttgcacaggcccacgggggaacgacgggcctgccggcgaacctggatgtcct
ggaccttctggaagccctggatgtcctggaccacctgggtctaaaggtatggctggcagt
gatggcctaccaggttgcagaggtccacgaggccagaaagggaatcggggggatccaggt
cctaaaggagaaccgcaaactgtctacaatcctggcgacccaggagaccccggatgcata
ggtccttctggtctgactgggcttaaaggggacagtggaatcaagggcccaactggcaga
tgtgggcaacatggatcacaaggcagccctggtgcaccgggtcctcctggagaacgaggc
ctggatggcttaccaggtgagcctggtgtcgatggctgtgttggagaagttggactttcg
ggttccccaggtcccaaaggtgccaaggggacacctggtcaaaatggaacaccaggagac
cctggtactccaggcgtaaatggcccaaaaggggacaaaggtgaaccaagttctcctgga
ccaggagagcaaggataccctggagagaagggtgagccaggcatacaaggccttaatgga
aagaaaggagaaagaggatgcattggccctgttggtattccaggatcagaagggattcgc
ggcgtggttggcgagacaggactaccaggacaaccaggatccccaggatttcctggagaa
aaaggtttagatggacagccaggccccctaggtcgtccgggaccagtaggcccaccaggt
tgttctgggtcaccgggcgatccgggtcctcaaggtcttaaaggaaaccagggcagtgac
ggcattcccggattagctggagaaaaagggaatgcaggagctcctggatatggacctcca
gggccagctggtgtcagaggtaaaccaggttgtaaaggggaaccaggagccatgggggaa
actgggcctccaggaaaatgtggtgcagtaggagacccagggccctgtggtgaaccaggg
ccgccaggaccccttgggaatcctggtgcgcagggtttgtgcgtggatggccccaaggga
gagcgaggacctcctggacaaccaggatcacaagggcccagagggatatgtggtccccca
ggacaacctggtctaggctttaagggagataagggcaacactgggacttctggaccacgt
ggagtgtgtggttgcccaggagacactggtccacaagggattccaggttatgctgggagc
gatggttaccctggtcccaaaggagaaacaggacaaaagggtgacactggatctcgaggt
caaagaggaagggatggctcacatggccaaccaggaaatcaaggagaaaaagggccaaaa
ggaccaccaggtgtaccaggggcggatgattactacagaatcatgcatattcccggagac
cgtggtctgcctggacctccaggaaagactggacctcctggagtaaccggttcaccagga
cttaaaggggcaataggagcccctggccctaaaggacttcctggccaagatgggttccct
ggtcttcaaggtttacgtggacagaaagggagcagaggattagcagggttgccaggagat
ttgggttttactggtgaagatggtcagaagggttccaggggtctaccgggaccctgcttg
accaacagtgcccgagatagcttcctgttcaccaagcacagtcagacacaagacatccct
tattgccctagtggatccagtaaagtctactctgggtactcactcctttttatcaacgcc
aacaaacggggacacggccaagatcttggcactatggggagctgtctacagatgttctcc
accatgccattccttttctgtaatagcgataatgtctgtcgctatgcctcccgaaacgac
tactcctattggctgtccactggcacacccatgcccagtgacctgccctcaatctcaggt
gataccctggcgcagtatgttagcaggtgctcagtatgtgacgctccaggtaatgtgata
gcgtttcacagccagaacaatacagtcccatcatgccccattggatggcggtctctgtgg
caaggctactcttatgtcatgcaatcaggtgtgggttccgagggctcgggtcagcccctg
tcgtctcctggatcctgtctggagaatttccagaggattccctttatcgagtgtcttggc
cgtggtacttgtaactactactcagatgcctacagctactggctggccgctctggatcct
agccagatgttcagtaaaccatccccgcggatagtaaaagaggactacccgagcatcatc
agtcgctgtcaggtgtgcatgaaggagccgtcttgtaatcagtcatcctga
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integrated database retrieval system
