Ictalurus punctatus (channel catfish): 108277702
Help
Entry
108277702 CDS
T04658
Name
(RefSeq) pre-mRNA-processing-splicing factor 8
KO
K12856
pre-mRNA-processing factor 8
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108277702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108277702
Spliceosome [BR:
ipu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108277702
Complex C
U5 SnRNP specific factors
108277702
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
108277702
NCBI-ProteinID:
XP_017346019
Ensembl:
ENSIPUG00000023230
UniProt:
A0A2D0STK3
LinkDB
All DBs
Position
17:16473094..16489132
Genome browser
AA seq
2338 aa
AA seq
DB search
MAAAFPYRGVPGGMPPGVPPPAPVPDYMTEEKLQEKARKWQQLQAKRYSEKRKFGFVDAQ
KEDMPPEHVRKIIRDHGDMTNRKFRHDKRVYLGALKYMPHAVLKLLENMPMPWEQIRDVP
VLYHITGAISFVNEIPWVIEPVYIAQWGAMWIMMRREKRDRRHFKRMRFPPFDDEEPPLD
YADNILDVEPLEAIQMELDPEEDSSVTEWFYEHQPLKDTTKYVNGTTYRRWQFSLPMMST
LYRLANQLLTDLVDRNYFYLFDLKAFFTSKALNMAIPGGPKFEPLVRDMNLQDEDWNEFN
DINKIIIRQPIRTEYKIAFPYLYNNLPHHVHLTWYHTPNVVFIKTEDPDLPAFYFDPLIN
PISHRHSVKSQEPLPDDDEEFELPEYVEPFLKETPLYTDNTANGIALLWAPRPFNLRSGR
SRRAIDVPLIKNWYREHCPAGQPVKVRVSYQKLLKYYVLNALKHRPPKAQKKRYLFRSFK
ATKFFQSTKLDWVEVGLQVCRQGYNMLNLLIHRKNLNYLHLDYNFNLKPVKTLTTKERKK
SRFGNAFHLCREVLRLSKLVVDSHVQYRLGNVDSFQLADGLQYIFAHVGQLTGMYRYKYK
LMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPGWRVWLFFMRGITPLLERWLGNLLA
RQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDILDMMPEGIKQNKARTILQHLSESW
RCWKANIPWKVPGLPTPIENMILRYVKAKADWWTNTAHYNRERIRRGATVDKTVCKKNLG
RLTRLYLKAEQERQHNYLKDGPYITAEEAVAIYTTTVHWLESRRFSPIPFPPLSYKHDTK
LLILALERLKEAYSVKSRLNQSQREELGLIEQAYDNPHEALSRIKRHLLTQRAFKEVGIE
FMDLYSHLVPVYDVEPLEKITDAYLDQYLWYEADKRRLFPPWIKPADTEPPPLLVYKWCQ
GINNLQDVWETTEGECNVMLESRYEKMYEKIDLTLLNRLLRLIVDHNIADYMTAKNNVVI
NYKDMNHTNSYGIIRGLQFASFIVQYYGLVMDLLVLGLHRASEMAGPPQMPNDFLSFQDS
ATESAHPIRLYCRYIDRIHMFFRFSADEARDLIQRYLTEHPDPNNENIVGYNNKKCWPRD
ARMRLMKHDVNLGRAVFWDIKNRLPRSVTTVQWENSFVSVYSKDNPNLLFNMCGFECRIL
PKCRTSYEEFTHKDGVWNLQNEVTKERTAQCFLRVDDESMQRFHNRVRQILMASGSTTFT
KIVNKWNTALIGLMTYFREAVVNTQELLDLLVKCENKIQTRIKIGLNSKMPSRFPPVVFY
TPKELGGLGMLSMGHVLIPQSDLRWSKQTDVGITHFRSGMSHEEDQLIPNLYRYIQPWES
EFIDSQRVWAEYALKRQEAIAQNRRLTLEDLEDSWDRGIPRINTLFQKDRHTLAYDKGWR
VRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDMIQALGGVEGILEHTLFKGTYFPT
WEGLFWEKASGFEESMKWKKLTNAQRSGLNQIPNRRFTLWWSPTINRANVYVGFQVQLDL
TGIFMHGKIPTLKISLIQIFRAHLWQKIHESIVMDLCQVFDQELDALEIETVQKETIHPR
KSYKMNSSCADILLFASYKWNVSRPSLLADSKDVMDSTTTQKYWIDIQLRWGDYDSHDIE
RYARAKFLDYTTDNMSIYPSPTGVLIAIDLAYNLHSAYGNWFPGSKPLIQQAMAKIMKAN
PALYVLRERIRKGLQLYSSEPTEPYLSSQNYGELFSNQIIWFVDDTNVYRVTIHKTFEGN
LTTKPINGAIFIFNPRTGQLFLKIIHTSVWAGQKRLGQLAKWKTAEEVAALIRSLPVEEQ
PKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKVEKFGDLILKATEPQMVLF
NLYDDWLKTISSYTAFSRLILILRALHVNNDRAKVILKPDKTTITEPHHIWPTLTDEEWI
KVEVQLKDLILADYGKKNNVNVASLTQSEIRDIILGMEISAPSQQRQQIAEIEKQTKEQS
QLTATQTRTVNKHGDEIITSTTSNYETQTFSSKTEWRVRAISAANLHLRTNHIYVSSDDI
KETGYTYILPKNVLKKFICISDLRAQIAGYLYGTSPPDNPQVKEIRCIVMVPQWGTHQTV
HLPVQLPQHEYLKEMEPLGWIHTQPNESPQLSPQDVTTHAKVMADNPSWDGEKTIIITCS
FTPGSCTLTAYKLTPSGYEWGRQNTDKGNNPKGYLPSHYERVQMLLSDRFLGFFMVPGQV
SWNYNFMGVRHDPNMKYELQLSNPKEFYHEVHRPSHFLNFASLQEGEIYNADREDMYA
NT seq
7017 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgcgtttccttacagaggagtcccaggtgggatgccaccgggtgttcctcct
ccagctcctgtccctgactacatgactgaggaaaaactgcaagaaaaagctcgaaagtgg
caacagctgcaggcgaaacgctactcggagaaaaggaaattcgggtttgtggacgctcag
aaggaggacatgcctcctgagcatgtgcgcaaaatcatcagggaccatggagacatgacc
aacaggaagttccgtcatgacaaaagagtctaccttggggctctgaaatacatgcctcat
gcagtgctcaagctgctggagaacatgcccatgccctgggagcagatcagagatgtacca
gtgctttaccacatcacaggagctatttcctttgttaatgaaattccctgggtcattgag
cccgtctacatcgcacagtggggtgccatgtggatcatgatgcggcgtgagaaaagagac
aggcgacacttcaagcgcatgcgtttccctcccttcgatgatgaagagcctcccctggat
tatgcggataacatccttgatgtggagcctctggaggccattcaaatggagctggacccc
gaggaggacagctctgtgacggaatggttttatgagcatcaacccctgaaggatacaaca
aagtacgtcaatggaactacatatagacgttggcagttcagtttgcccatgatgtctaca
ctgtatcgtttggccaatcagctgcttactgatctggtggatagaaactacttttatctg
tttgatctgaaggccttcttcacttcaaaagcattgaacatggccattcctggaggaccc
aaattcgaaccgctagtcagggacatgaatctccaggatgaagactggaacgagtttaac
gacatcaacaagatcatcatcagacagcctattaggacggaatacaagattgctttcccg
tacttgtataacaaccttccccatcacgtgcacctcacttggtaccacacacctaatgtg
gtgttcatcaagacagaggatccggatctgccagccttctactttgaccctctcatcaat
cccatttctcacagacactctgttaaaagccaggagccactgcctgatgatgatgaggag
tttgaacttcctgagtatgtggagcctttcctcaaagagacacccctgtatactgacaac
acagccaatggcattgctttattgtgggcccctcgtccgttcaacttgcgctcagggaga
agccgtcgtgccatcgacgttcctctcatcaagaactggtaccgggagcattgccctgca
ggacagcccgtaaaagtacgcgtctcgtatcagaagcttctgaagtattatgtgctcaat
gctctgaaacacagaccacctaaagcacaaaagaagaggtaccttttccggtccttcaag
gccaccaaattctttcagtccacaaagttggactgggtggaggtgggtctccaggtttgc
cgtcagggttacaacatgctgaacctgctgattcacagaaagaacctcaactacctgcac
ttggactacaacttcaacttgaagcctgtgaaaaccctcaccacaaaagaacgtaagaag
tcccgtttcgggaatgcgttccacttgtgccgtgaggttcttcgtctgagcaaactggtt
gtggacagccatgtgcagtacagactggggaatgttgactcattccagttggcagatgga
ctgcagtatatctttgcccatgttggtcagctgactggcatgtatcgttacaagtacaag
ctaatgagacagatcaggatgtgcaaggacttgaagcatctcatttactatcgcttcaac
acaggcccagttgggaagggtccaggttgcggcttctgggctccaggatggagagtgtgg
ctcttcttcatgaggggcatcactcctctactggagagatggcttggcaacctgttggcc
aggcagttcgaaggtcgacactccaagggtgtcgcaaagactgtgactaaacagcgtgtg
gagtctcactttgacttggagctgagagcagctgtgatgcatgacatcctggacatgatg
cctgagggaatcaaacagaacaaggccaggaccattctgcagcatctcagtgaatcgtgg
aggtgctggaaggccaacattccctggaaggttccagggcttcccacccccattgaaaac
atgatcttgagatacgtcaaggccaaagccgactggtggactaacacggcgcattacaac
cgtgagcgaatcaggcgaggagcaaccgtggacaaaactgtctgcaagaaaaaccttggc
cgcctcacacgcctctacctgaaggctgagcaggagagacagcacaactacctaaaggat
ggaccatacatcaccgctgaagaagcggttgctatctacaccacaacagtgcactggctg
gagagtcggcgcttctctccgattccctttccccctctctcatacaagcacgacaccaag
ctgctcatcctggctctggagaggctcaaagaggcttacagtgtaaagtcaaggttgaat
cagtcccaacgtgaggagttgggtctgattgagcaggcgtacgacaatcctcacgaggct
ctgtccaggatcaagcgtcatctcctcactcagagagcgttcaaagaggtgggcattgag
tttatggacctgtacagtcacttggtgcccgtttatgacgtggagcctctggagaagatc
acagacgcttacctggaccagtacttgtggtatgaggctgacaagcgcaggcttttccca
ccttggatcaaacctgctgacacagagccacctccactgttggtatacaagtggtgccaa
ggaatcaacaacctgcaagatgtatgggagaccacagagggcgagtgtaacgtcatgctg
gagtcacgctacgagaagatgtatgaaaagatagacttgactctgcttaacaggcttctg
cgtctgattgtcgaccacaacattgccgattacatgactgcaaagaacaacgtggtcatc
aactacaaggacatgaaccacaccaactcgtacggcatcatcaggggcctgcagtttgcc
tccttcattgtgcagtactatgggctggtgatggacctgctcgttctgggtcttcaccgc
gccagtgagatggctggacccccgcagatgcccaacgatttcctcagcttccaggacagt
gctacagagagtgcccaccccattcgcctgtactgcagatacattgaccgcatccacatg
ttcttcaggttttctgctgatgaagccagggatctgatccaacgctaccttactgagcac
cctgatcccaacaatgagaacattgtaggctacaacaataagaagtgctggcccagagat
gctaggatgaggctgatgaaacatgatgttaacctgggccgtgccgtgttctgggacatt
aagaatcgccttcctcgctctgtgaccacggtgcagtgggagaacagctttgtgtccgta
tacagtaaagacaaccctaacctgctcttcaacatgtgcggattcgagtgccgcatcctg
cccaaatgtcgcaccagttatgaggagttcacccacaaggacggagtgtggaacctgcag
aatgaggtgaccaaggaaaggacagcgcagtgcttcctgcgagtggatgacgaatcaatg
cagaggttccataaccgagtgcgacagattctcatggcctctggatccaccaccttcacc
aagattgtgaacaaatggaacaccgctctgattggtctgatgacctatttccgtgaggct
gtggttaacactcaggagttgctggaccttttggtgaaatgtgaaaataagatccagacc
cgtatcaagattggtctgaactccaaaatgcctagccgtttccctcctgttgtcttttac
acccccaaagagttaggaggtctgggcatgctttctatgggtcacgtcctcatcccacag
tctgacctgaggtggtccaaacagaccgacgtgggcatcactcacttccgttccggtatg
agccatgaggaggatcagctgattcccaatttgtatcgctacatccagccatgggagagt
gagttcatcgactctcagagagtctgggctgaatatgctctcaagagacaggaggccatt
gcccagaacaggcgtttgactcttgaggatttggaggattcctgggacagaggtattcct
cgtatcaacaccctgttccagaaagacaggcacacgctggcctatgacaagggctggaga
gtcagaacagacttcaagcagtatcaggtgcttaagcaaaatccgttctggtggactcac
cagagacacgacggtaaactgtggaatctgaacaactaccgcacagacatgatccaagcc
ctaggaggagtggaaggaattttggagcacactctgttcaagggtacatactttcccacc
tgggagggtctgttctgggagaaggccagtggttttgaggagtccatgaaatggaagaag
ctgaccaatgcccagagatctggtctgaaccagatccccaatcgacgattcactttgtgg
tggtctcccacgattaacagagcaaatgtatacgtgggtttccaggtgcagttggatctc
actggaatcttcatgcatggcaaaattcccactctcaagatctccttgatccagatcttc
agagctcacttgtggcagaagattcacgagagcattgtcatggatctgtgtcaggtgttt
gaccaagaactggatgcgctggagattgaaaccgtccagaaggaaaccatccatcctagg
aagtcttacaagatgaactcctcttgtgcggatattctgctttttgcatcgtacaagtgg
aacgtctcaagaccgtcactgctggctgactccaaggatgtgatggacagcaccaccact
cagaagtactggattgacattcagctcagatggggagattatgactcccatgacattgag
agatatgccagggcgaagtttctggactacaccacagataacatgagtatctacccatcc
cctactggggtgctcatagccatcgatctggcatacaatctgcacagtgcctatggaaac
tggttccctggcagcaaacctctgatccagcaggccatggctaagatcatgaaggccaac
cccgccttgtacgtgctgagggagcgcatccgcaagggtctgcagctttactcctccgag
cccactgagccctacctgtcatcacagaattacggagaactcttctccaatcaaatcatc
tggtttgtggatgacaccaacgtgtaccgagtcaccatccacaagacctttgagggcaac
ttgaccacaaaacccatcaacggggccattttcatctttaatccaagaaccgggcaactc
ttcttaaagatcattcacacatctgtatgggctggacagaagcgtctggggcagctggcc
aagtggaaaactgctgaggaagtggctgctcttattcgatcactgcctgttgaagagcag
cccaagcagatcattgtgaccagaaagggcatgttggatcctcttgaggtgcacttgttg
gatttccccaacattgtcatcaaaggctctgagctgcagctgcccttccaggcatgtcta
aaggtggagaagtttggggacctcattctgaaggccactgagccacaaatggtcctgttc
aatctgtacgatgactggctgaagaccatttcttcttacactgccttctcacgtctgatc
ttgatcctgagagccctccatgtgaacaacgaccgtgcaaaggtcatcctgaagcctgac
aaaaccaccatcactgagccacatcacatctggcccactctgactgatgaggagtggatc
aaggtggaggtgcagctcaaagatctcatcttggctgactatggtaaaaagaacaatgtg
aacgtggcttctctgacgcagtctgagatcagggacatcatcctgggtatggagatctct
gctccctctcagcagaggcagcagattgctgagattgagaagcagactaaagagcagtct
cagctaacagccacgcagactcgcaccgttaacaagcacggtgatgaaatcattacttcc
accaccagcaactatgagactcaaaccttctcctcaaagactgaatggagagtcagggcg
atctctgcagccaacttgcacttacgtaccaaccacatctatgtgtcttctgatgacatc
aaagaaactggatacacttacattctgcctaagaacgtgctgaagaagttcatctgcatc
tctgacttgcgtgctcaaattgccggttatctgtacggtacaagtcctccagataaccca
caggtgaaagaaattcgctgcattgtaatggtgccacaatggggcacccatcaaaccgtt
cacctgcctgttcagctgccacagcacgaatatctcaaggaaatggagccgcttggttgg
atccacacccagcccaatgaatcgcctcagttgtctccccaagatgtcaccacacacgct
aaagtcatggctgataatccatcctgggatggcgagaagaccatcattattacctgcagt
ttcactccaggatcttgtacgttgactgcgtataagctgactcctagtggatacgagtgg
ggcaggcagaacacagataagggcaacaaccccaagggttacctgccatctcactatgaa
agggtgcagatgctgctgtcagatcgcttccttggcttcttcatggtgcctggccaagtg
tcctggaactacaatttcatgggcgttcgacacgaccctaatatgaaatacgagctgcag
ctgtctaaccccaaagagttttatcacgaggttcaccggccttctcacttcctcaacttt
gcatcgctgcaggagggcgagatctacaacgctgaccgtgaggacatgtacgcttag
DBGET
integrated database retrieval system
