Ictalurus punctatus (channel catfish): 108277703
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Entry
108277703 CDS
T04658
Name
(RefSeq) scavenger receptor class F member 1 isoform X1
KO
K24318
scavenger receptor class F member 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
108277703
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108277703
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Phagocytosis
Scavenger receptors
108277703
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EGF_laminin
EGF_TEN
EGF_PEAR1L
Motif
Other DBs
NCBI-GeneID:
108277703
NCBI-ProteinID:
XP_017346020
UniProt:
A0A2D0SUN6
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Position
17:16508973..16520432
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AA seq
896 aa
AA seq
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MECLNIVLSCMGLLFLCFPVSTQKLSSTGRNVCLSPRDSALVCCLGWAQQGEECTIPLCE
GQNACMQNDVCVYPGVCRCKPGFYGFHCKTPCPPELWGSDCREQCLCHPNGRCDPATGVC
KCFSSHWGNLCQNSCKCGRHGRCDSVYGNCTCEEGWWSSTCTKVCQCHPSTSRCDPATGH
CICNKDYWGQKCSLRCNCYISPCLQHSGECQCISGWWGPNCDRQCICNLSHSTCDPRTGE
CICQPGYKNPFCHEPCSAGYYGSGCSESCGHCEGGKPCSKLDGSCSSCAPGWNGTRCDQP
CPSGYHGIWCQEVCPHCRKGDPCDAVTGKCAHCEPGWTGPRCDQLCASGTFGDSCRFLCS
PCYHGRCDHVTGSCLCHPGFQGESCNSSCPDKMYGINCSSSCDCGGDACHPATGECPYSS
RARLLAGLLIPLLVLILALLFCCCCCGSPADGKDRVAIGDGSTTGRMKHHVYTVLANMGS
AMPCLTLWSSGLPRVTVSHHDPELTFNHSFIEPPSGWVSDSFETDEDGEAVYCVPPQEDI
PAVAGGELQFQEMGSKCNFLSEPPTFSSEDMSLAFGIPRTSSIAKSKRPSVSFAEGTKFS
PKERRGSTQEVARKPKTPWGVLMLSNLQGAQGSHGQTEGEKDETSDEAKASEEQEANSLT
EADPERNGSTPSRTHLSVPGSRRHAPSNTKKSLQSQPSSEGHEMDTGTEKVSTVYVTVGK
PLRASKADLSSEGPVQAMLRRLGSIQRHREEAVQPKSKGAAMTKPPRRKLGARASLWEQA
AISGKPDVVMRKPSRRKHTSLSSPCTVGAAESLQENSVPKRPLSSILRNVPESTTQVSGG
DMDTRTVSDSDTKSDAIYETVAVSEEVSTSSEVITNETLTVQDEEPKYENVYINHS
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggagtgcctgaacattgtcctgtcctgcatgggactgctcttcctctgctttccggtc
tccactcaaaagctctcatcaacagggaggaatgtttgcctcagcccaagggactcggct
cttgtgtgttgtttaggatgggcccagcagggtgaagagtgcacaatacctctctgtgaa
ggacagaatgcctgcatgcagaacgacgtttgtgtgtatcccggagtgtgcagatgcaaa
ccaggcttttatggattccactgtaaaactccttgccctcctgagttatggggctctgac
tgtcgtgagcagtgcctgtgtcaccctaacggccgttgtgaccctgctacgggtgtatgc
aagtgcttttcttcccactggggcaatctgtgccagaatagctgtaaatgtggacgtcac
ggccgctgcgactccgtctacggcaactgcacttgtgaagagggctggtggagttccacc
tgcaccaaggtgtgccagtgccaccccagcacctccagatgtgaccctgccacaggccac
tgcatctgcaacaaagactactggggtcagaagtgcagccttcgctgcaactgctatata
tcaccatgcctgcaacactcaggcgagtgtcagtgtataagtggctggtggggacccaat
tgtgatcggcagtgcatctgcaacctgagccacagcacgtgtgacccccgcacaggagag
tgtatatgccaaccgggatacaagaaccccttctgccatgagccgtgcagcgcgggatac
tatggcagcggctgctcagagagctgtggacattgtgaaggaggtaaaccgtgttctaaa
ctggacggctcgtgcagctcctgcgctccgggatggaacggcacacggtgtgatcagccc
tgcccatctggttaccatggcatctggtgccaggaggtgtgtcctcactgcaggaaaggg
gacccttgtgatgccgtaacaggaaagtgtgcacactgcgaacctggctggactggaccc
aggtgtgaccagctgtgcgccagtggtacttttggggacagctgccgtttcctgtgcagt
ccctgctatcacggtcgctgtgatcatgtgacaggaagttgtctttgccatcctggcttt
cagggtgagagctgtaacagttcatgtccggataagatgtatggaataaactgctcgtca
tcctgtgactgtggaggtgatgcgtgccatcctgccactggagaatgtccctacagcagt
cgagccagacttctagcaggacttctgattcctctgctggttctcatcctcgccttgttg
ttttgctgctgctgttgtggaagtccagctgatgggaaggacagagtggcaataggggat
ggaagcacgacaggtcgaatgaagcatcatgtctacacagtgctagccaacatgggctca
gccatgccgtgtctcactctctggtcctctgggcttcccagggttacagtttctcaccat
gatccagagctcacctttaaccacagcttcatcgagcccccctcaggctgggtctcagac
tcttttgagactgatgaggatggtgaggccgtgtactgtgtccctccacaagaagacatc
ccagctgtagcaggaggtgagctccagttccaggaaatgggctcgaagtgtaacttctta
tctgagccaccaacgttcagcagcgaggacatgtctctggcttttggcataccaaggacc
tctagcattgccaagtccaagcggccctctgtttcctttgcggaaggcaccaagttcagc
ccgaaagagcggcgtggctcgactcaggaggttgcccgcaagcccaaaactccatgggga
gtcctgatgctctccaacctccagggagcgcaggggagccatgggcagaccgaaggagaa
aaagatgagacaagcgatgaggcgaaagcctcagaggaacaagaagctaactccttaact
gaggcagacccagagaggaacggctccaccccgtcaaggactcatttaagtgtaccaggc
agcaggcggcatgctccatccaacactaagaagagcctacagtcacagccctcgtctgag
gggcatgagatggatacagggacagagaaggtgtccactgtttatgtgactgtaggcaag
cctctgcgggcatcgaaagcagacttgagctccgaggggccagtgcaggccatgttacgc
aggctgggcagcatccaaagacatagagaggaagcagtacagcccaaaagtaagggggca
gccatgacaaaacccccacggaggaaactgggggcgcgggccagcttgtgggagcaggcg
gctatttcaggaaagccagatgttgtcatgaggaagcctagtcgtagaaaacacacctcc
cttagctctccatgtacagtaggggctgcagagtcgctgcaggagaacagcgtccccaag
agacctctgtcctctatactcaggaatgtcccagaaagcactacgcaggtctcagggggg
gacatggacacgagaacagtctctgactcagacactaagagtgacgctatctatgagaca
gtggctgtatcagaggaggtgtctacttcatcagaggttattactaatgagactctgaca
gtacaagatgaagagcccaaatatgaaaatgtttatataaatcattcatga
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