Ictalurus punctatus (channel catfish): 108277729
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Entry
108277729 CDS
T04658
Symbol
tsku
Name
(RefSeq) tsukushi isoform X1
KO
K08130
tsukushi
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ipu00535
]
108277729 (tsku)
Proteoglycans [BR:
ipu00535
]
Extracellular matrix (ECM) proteoglycans
Small leucine-rich proteoglycan (SLRP) family
class IV
108277729 (tsku)
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GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
LRR_LRWD1
LRR_14
LRR_EndoS
LRRNT
LRR_RPS2
Motif
Other DBs
NCBI-GeneID:
108277729
NCBI-ProteinID:
XP_017346073
Ensembl:
ENSIPUG00000014475
UniProt:
A0A2D0STQ4
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All DBs
Position
17:22684550..22698813
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AA seq
374 aa
AA seq
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MFARVESSAGSSFAEKVNVESQRVSIMVAFLCLSLTSLLAQVTAGGVKNCHPKCRCEVES
YGLFDSFSLTKVDCSGHGPDATPIPIPLDTSHLDLSHNSISYITDSMLSGPGYTTLVSLD
LSKNLISRMSSKAFNKLRYLETLDLSQNVLENLSDGCFSGLPLTEVDLSDNRFREFDLNV
FNTRGPETPISVDLSNNLLSAISRNPRLHAPYIKSLMLAGNQLRTVPRLAGIRLQYLSLD
GNLIRSIDEGAFEELTDLVYLTLSGLPELSVIHPNSFRGLRNLQVLDLSNNFQLRTLGPD
VFNGLSALQELNLSKSVATPLPVTIFNNMPSIKSATLGPNMHCWKTHKQGQFHRQIGQAK
ANDILTCDVPGIIL
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atgtttgccagagtcgagtccagtgctggatcttcctttgcagagaaagtaaatgtggag
tcacagcgcgtgagcatcatggtggccttcctgtgcctcagcctgacctctctgctcgcc
caggtcacggcaggaggggtgaagaactgccacccgaagtgccgctgtgaggtggagagc
tacggcctgttcgacagcttcagcctcaccaaggtggactgcagtggacacggaccggac
gccactcccatccccattcctctagacacgtcccacttggatctgtcccacaactccatc
agctacatcaccgactccatgctgtcaggacccggatacacgactctggtcagcttggat
ctcagcaagaacctcatatcacgaatgagctccaaggcctttaacaaactgcgctacctg
gagaccctggacctcagccagaacgttctggagaacctcagcgatggatgcttctccggt
ctccccttaaccgaggtggatctcagcgacaacagatttcgcgagttcgacctaaacgtt
ttcaacacacgaggcccggaaacccctatcagcgtagatctttctaacaaccttctcagc
gcgatctcgagaaaccctcgcctccatgcgccgtacatcaagagcctgatgctggcaggc
aatcagctcaggaccgtgcccagacttgcaggaattcgcttgcagtatttgagcctggat
ggaaatcttatccgcagcatcgatgaaggagccttcgaggagctgacggatctcgtctat
ctcactctcagcggcctccccgagctgtccgtcatccatccgaacagcttcagaggcctg
aggaatctccaagtcctggacctttcaaacaactttcagctcaggactttgggtcccgat
gtgtttaatgggctgagtgctttacaggagctcaatctgtccaaatcggtagccactccg
ttacctgtgaccatctttaacaacatgccaagtattaaaagtgcgactctggggccaaat
atgcattgctggaaaactcacaagcaaggacagttccacaggcagataggacaagcgaaa
gcaaacgacattttgacttgtgatgttccaggaatcatattgtaa
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