Ictalurus punctatus (channel catfish): 108277843
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Entry
108277843 CDS
T04658
Name
(RefSeq) protein Smaug homolog 2
KO
K27396
protein Smaug
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108277843
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108277843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SAM_1
PHAT
SAM_2
Motif
Other DBs
NCBI-GeneID:
108277843
NCBI-ProteinID:
XP_017346309
Ensembl:
ENSIPUG00000019318
UniProt:
W5UL70
LinkDB
All DBs
Position
17:2067669..2081955
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AA seq
669 aa
AA seq
DB search
MMFRDQVGILTDWFKGWNECEQTVALLSLLKRVSRTQARFLHICLEHWLADCTEIHLLEA
EANNAAIVSQWQQEPKEKAVSLLLSHLPLLQPRNSEAKCEYMKLLQQVLSHTIESSMFVE
ESRQLLSYALIHPATTLDDRTTLALWLNHLEEHLSARPPPGPYHHHHARQGSDEWTGPTE
SLEVAHAWHDKPPSTCSSPAGQNGHMAFPSAGGVPSPINSAGLSGQVQSSSVPRSMSLVP
ANQPGCSSDWLGQDEVGGRQGATGAEHAPLSPQGSVASSGSEQTEDQSNTRNTFQEDGSG
MKDVPTWLKSLRLHKYASLFSQMSYEEMMILTEQHLESQNVTKGARHKIALSIQKLRERQ
SVLKSLEKDILEGGNVRNALQELQQIIITPIKAYTPPTAAQRELEPGATNTDKAANPVEE
KDAAVEGFQSHNPPPCDGESSSTPISEGDIPGQFTRVMGKVCTQLLVSRPDEENISCYLQ
LIEKCSIHEAFTETQKKRLASWKQQVLKLLRLFPRKAMLDMPVYRQKGWAYGSNSLPTAG
SVGGGVSRRGQRQFPLPPRGAPLPNRMGLITHSPRHTLANQPALSTQGRQNLWFGNPGGS
NSMPSQSRSSVQRTHSLPVHTSPQTMLLFQQTECPVPGTDLEINPTLESLCLSMTEHALG
DGMDRTSTI
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgatgttccgggaccaggtggggattttgacggactggtttaagggctggaacgaatgc
gagcagacggtggcgctgttgtcgctgctcaagagggtttcgaggacccaagcgcgattc
ctccacatctgcctggagcactggctggccgactgcactgagatacacttactggaggct
gaggccaacaatgcagccatagtgagccagtggcagcaggagcccaaagagaaggccgtg
tcactgctgctctcacatctccccctgttgcagccacgtaacagtgaggccaagtgtgag
tacatgaagctgctacagcaggtgctgagccacaccatcgagagcagcatgtttgtggag
gagagccggcaattgctttcctatgccctcatccacccggccaccactcttgatgatcgc
accactctcgcgctgtggctcaaccaccttgaggagcacctgtcagctcgaccaccgcct
ggaccataccaccaccatcatgctcgacagggctcggacgaatggacgggtccgaccgag
tccttggaggtggcacatgcatggcatgataaaccgccgtccacatgtagctcgcctgcc
ggccagaacgggcacatggcctttcccagtgcaggtggagtgccttcacccatcaacagt
gcaggcctttctggtcaggtacagtcgagctcagtgcctcgttcgatgtctcttgttcct
gccaaccagccaggctgcagctctgattggctgggccaggatgaagtgggtgggcgccag
ggtgcaacaggggcggagcatgcaccactgtctcctcagggcagtgttgcttcgtcaggc
agcgagcagacggaggatcaatccaacacacggaacacattccaggaggatggcagcggc
atgaaagacgtgccgacgtggctaaaaagtctccgtctgcacaagtatgcatcccttttc
tcccagatgagttatgaggagatgatgatccttactgaacagcatctggagtcacagaac
gtgaccaaaggagctcggcacaagatagcgctgagcattcagaagctgagagagcgacag
agcgtcctcaagtctctcgaaaaggatatcctcgaaggcgggaacgtccggaacgccctg
caagaacttcagcagatcatcatcacgcccatcaaagcctacaccccgcccactgctgcc
cagagagagctggagcctggagccacaaacactgacaaggcagccaatcctgtagaagag
aaagatgcggctgtagagggctttcagagccacaatcctccgccctgtgatggggagtct
tcgtccacgcccatctcagaaggagacattcctgggcagtttacgcgggtgatggggaaa
gtgtgtacgcagctgctggtgtcgcggccggatgaggagaacatcagctgctacctgcag
ctcatcgagaagtgttcaatacacgaggcgttcacggagacgcagaagaagcgcttggca
tcttggaagcaacaggtgctgaagctgctccgccttttcccacggaaagccatgctggac
atgcccgtgtaccgacagaaagggtgggcgtatggttcgaactctttgcctacagcaggc
tctgtgggtggaggcgtgtctcggcgaggacagagacagtttcccctgccccctcgtgga
gctccgcttcccaaccgcatgggcctcatcacacactctccacgacacacactcgccaac
cagccggccctcagcacacagggcaggcagaacctgtggtttgggaatcctggagggagt
aacagcatgccgagtcagagccggagctccgtacagagaacacactctctccctgtacac
acatctccacaaaccatgctcctgtttcagcaaacagaatgcccagttccagggactgac
ctggagatcaaccccacgctggagtcactgtgcctcagtatgactgaacacgccttagga
gatggaatggatagaacgtcaacaatatga
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