Ictalurus punctatus (channel catfish): 108277875
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Entry
108277875 CDS
T04658
Name
(RefSeq) RNA-binding protein Musashi homolog 2b isoform X4
KO
K14411
RNA-binding protein Musashi
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108277875
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108277875
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108277875
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_7
RRM_PARP14_3
PHM7_cyt
TASOR_alpha-beta
Motif
Other DBs
NCBI-GeneID:
108277875
NCBI-ProteinID:
XP_017346371
Ensembl:
ENSIPUG00000003732
UniProt:
A0A2D0SV20
LinkDB
All DBs
Position
17:complement(12562828..12827891)
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AA seq
404 aa
AA seq
DB search
MEGDGSQATSGSPTDSQHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKR
SRGFGFVTFADAASVDKVLGQPHHELDSKTIDPKVAFPRRAQPKMVTRTKKIFVGGLSAN
TVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTFENEDVVEKVCEIHFHEINNKMV
ECKKAQPKEVMFPPGTRGRARGLPYTMDAFMLGMGMLSYPNIVATYGRGYTGFAPSYSYQ
FPGFPAAAYGPMAAAAVAAARGSGFPDYGFYSTTSDQRGPPFSFADYGSLGPQAAQLLQS
EHATSACNSPLQHLPSPDQYKSPGTNPPRPGTFPGASSPGPVADLYGPTSQDSGVGNYIS
AASPQPGSGFGHSIAVTAIQLQALQHGTDKDELRWQDLTNKRNV
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggagggagacgggagccaagccacgtccgggagtccgaccgattcgcaacacgaccca
ggtaaaatgttcatcggtggcctcagctggcaaacttcaccagacagccttagagactat
tttagtaaatttggagaaatccgagaatgtatggtgatgagggatcccacgaccaagcgc
tccaggggatttgggtttgttacgtttgcagatgcggccagtgtagataaagttttaggt
caacctcaccacgaattagactcaaagacgattgaccctaaagttgccttcccgagacgt
gctcaacccaagatggtcacaagaacaaagaaaatatttgtaggcggattatcagcgaac
acagtagtcgaagatgtgaagcagtatttcgaacagtttggcaaggtagaggatgccatg
cttatgtttgataaaactacaaataggcatagaggatttggctttgtaactttcgagaat
gaggatgtggtggagaaagtctgtgagattcattttcatgaaatcaataataaaatggta
gaatgtaagaaggcacaacccaaggaggtgatgtttcccccagggacacgagggcgagcc
aggggtctaccctacaccatggatgccttcatgctaggaatgggaatgctgagttaccca
aacattgtagcgacgtacggccgtggatacactggcttcgccccgagctacagctaccag
ttccctggctttcctgcggcggcgtatggtccgatggcggcagcggcagtggcagcagca
cgtggttcaggcttccccgattacggtttctattccacgacaagtgaccaacgggggccc
cccttctcctttgcggactatggctctctaggcccacaggcggctcagctgcttcaaagc
gagcatgccacctcggcctgcaactcccccctgcagcacctgcccagcccggatcagtat
aagagcccaggcaccaaccctccgcggcctggaacttttcctggagcgagcagtccagga
cctgtggctgacctgtatggccccaccagccaggactctggcgtgggcaattacataagc
gctgctagccctcaacctggctccggcttcggccacagtattgctgtaacggccatacaa
ctccaagcactacagcatggaacagacaaggacgagctgagatggcaggatctgacgaac
aaaagaaacgtctga
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