Ictalurus punctatus (channel catfish): 108277910
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Entry
108277910 CDS
T04658
Symbol
arhgef12a
Name
(RefSeq) rho guanine nucleotide exchange factor 12 isoform X1
KO
K07532
Rho guanine nucleotide exchange factor 12
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04270
Vascular smooth muscle contraction
ipu04625
C-type lectin receptor signaling pathway
ipu04810
Regulation of actin cytoskeleton
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09142 Cell motility
04810 Regulation of actin cytoskeleton
108277910 (arhgef12a)
09150 Organismal Systems
09151 Immune system
04625 C-type lectin receptor signaling pathway
108277910 (arhgef12a)
09153 Circulatory system
04270 Vascular smooth muscle contraction
108277910 (arhgef12a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108277910 (arhgef12a)
Membrane trafficking [BR:
ipu04131
]
Others
Rho GTPase associated proteins
Rho guanine nucleotide exchange factors (GEFs)
108277910 (arhgef12a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RGS-like
PH_16
RhoGEF
PDZ
PDZ_6
PH_13
PDZ_2
SOS1_NGEF_PH
Pept_S41_N_bact
DUF4350_C
Motif
Other DBs
NCBI-GeneID:
108277910
NCBI-ProteinID:
XP_017346452
UniProt:
A0A2D0SUT5
LinkDB
All DBs
Position
17:8594394..8664159
Genome browser
AA seq
1349 aa
AA seq
DB search
MSDIQPTLTDRFSKKAIRTSSILSRDHPPDKKPKSDQASVPPAQDFDSTGLVQRCVIIQK
DENGFGLTVSGDNPVFVQLVKEDGAAMRAGVQTGDRIIKVNGTLVTQSNHVEVVKLIKSG
SYVALTVLGRPPGLPQIPLSEVDLNLESLEDKGASSVSFPQSPRHVQSKREYKEENSVMH
NLKLDNMEKKLTKERREFQDMKEEYVKNPTLRLLKDIQEVKRNAHRAIQDGLPVGDGVLD
VDRASSDGFWSPTLHRHHTASPKTAGQKDSNSLKSIQRDGLNSCSSPENAHTSDLDSHLH
PGVKSASSSASSQIIGAEDDYFDSEHEQEQVNVHCNCFKSLELLKSRPAHLAAFLHHVVS
QFDPAPVLCYLYTDLYKQTNSKETRRIFMDIFTFFIDRGANLKVIVPESISSELERRRPE
LIPEELHRQYVQTMQDTLLPEVNRILEDFRQKHSMGLTLAEGERAHPDTEQLKDATALER
ERSCAENILAKIDDILLSSLAAEEDKCTTIQYVIYIYMKHLGVRGKEQRNLESKRVRINF
LPKIKKSSKLEKEVEEKVKKPRFNILVPQRRPSRIETTPVGRTMDGSKPKPQKQLSQPAM
GKCEVDGGRLRGSQSSEGSDLISNIPPYSPISDTAFRDIDCSVNPSSVLHGLTDVIQVGE
GLDMTYPPCDYLPYNVEHLDEDRDGDRFVDVGTPKLSRRLEETLSEDDGVYSDMDPPNWQ
QLVKMEVLAELTPQEIKRQEVINELFYTERAHVRTLKVLDNVFYQKLTRDSILPPADIKN
IFSNLEEIIQLHVMISEQMAAIRKRNETSVVDKIGDDLLSWFSGEEEEKMKHAVGTFCSN
QPFALELIKSRQKKDQRFLTFMHEAESNRMCRRLQLKDIIPAEMQRLTKYPLLLENIAKY
TGDAEEKDKVRKAADCCRKILNHVNQAVKESENKQHLEDYQRRLDLSTLKQSENPLISEF
KNLDLTKRKLIHEGPLTWKLNKDKTVELYTLLLEDILVLLQKQDERLVLKCHSKNRAGSA
DTQHIFSPVIKLNTVLVRSVATDNRSFFVLSMSDNGAQIYELMAQTVSEQRIWQRHIIQR
AEAMKSRPHSVIPLPQSGGERSGVGVGKPAKAPERECSSNAQASGKAHDAASDRAANNEE
QEQIRAHGHDESSYPEPELLAGCDTDFPSSSCRADEALKTLAALKQVLVTQLMAQNDGER
MGRRLLRTTSLRTSCRTQDASSGDTGFYEGTEDYGLSVRVIEAGYLLLEGSGGSEGSTDD
NVQYRRKELGLSRGCAADSGISLRFSSSSAESLCGISRQVLTYLRSLQANLNHLKELESR
YYLLRQKQESADTGGNKGAINLSVFIELL
NT seq
4050 nt
NT seq
+upstream
nt +downstream
nt
atgagcgacatacagccaacactcactgacaggttttccaaaaaagcaatcagaaccagt
agcattctcagcagagatcaccccccagacaaaaagcccaaaagtgaccaggcttcagtt
cctccagcacaagactttgactctacagggctggttcagagatgtgtgatcattcagaaa
gatgagaatggttttggcctaacagtgagcggcgacaaccctgtgtttgtgcagctcgtc
aaagaggatggagccgctatgcgtgcaggggttcagactggggacaggatcattaaggtc
aatgggaccttggtgacacaatcaaatcatgttgaagtggtgaagttaatcaaatcgggt
tcctatgtggcccttactgtgttgggccgaccacctgggttaccccagattcctctttca
gaagttgatctgaacctagagtcattagaggataaaggggcatcctcagtctctttccca
caatctccacgacatgtccagagcaagcgggaatacaaggaagaaaacagtgtcatgcac
aacctgaaactggacaacatggagaagaagctgactaaagaaagacgggaattccaggac
atgaaggaagaatatgtcaagaatcctaccctccggctactgaaggacattcaggaagtg
aaaagaaacgcgcacagagctattcaggatggcctgcctgttggagatggtgtgttggat
gtagaccgggccagttcagatggcttctggagccctaccctgcatcgccaccacacagct
tcccctaagactgctgggcagaaagactcgaatagtctaaagagcatacaacgagacggt
ctgaactcatgctcttcacctgagaatgcacacacctctgacctggattcgcatctccat
cctggtgtgaaaagtgcttcctccagtgcgtcctctcagatcattggagctgaggatgac
tactttgactcagaacatgagcaggagcaggtgaacgtgcactgtaactgtttcaagagt
ttggagctacttaagagtcgacctgcacaccttgcagcttttttgcaccatgtggtgtcc
cagttcgaccctgctcctgtgctttgctacctttacactgacctgtacaagcaaaccaac
tcaaaagaaaccaggcggatcttcatggacatcttcacctttttcattgacaggggggct
aacttaaaagtaattgttcctgaatctatctcttctgaacttgaacgacggaggccagag
ctgattcctgaggagttacacagacaatatgttcagaccatgcaggacacacttctccct
gaagtgaacagaattctagaggacttcagacagaagcacagtatgggtctgaccttagct
gagggagagagagctcatccagacacagaacagttaaaagatgccactgctctggagaga
gagagatcctgtgctgagaacatcctagccaaaatagacgacattctgttgtcctcacta
gctgcagaagaggacaaatgtaccacaatacaatacgtgatctacatctacatgaaacac
ctgggtgtgagaggaaaagagcagcgtaacctagagtccaaacgtgtgcgcataaacttc
ctgcccaagatcaaaaagagcagcaaactggagaaagaagttgaagaaaaggtgaagaag
cctcgtttcaatatccttgtgcctcagcgtcggccaagccgcattgaaacaacacctgta
ggtcgcaccatggatggaagcaagccaaagcctcagaagcagctctcgcaaccagcgatg
ggaaagtgtgaggtagacggtgggcgtttacggggaagccagtcgagcgaaggctcagac
ctcatcagcaacattcctccctacagccctatctcagatacagccttcagagacatagac
tgcagtgtgaacccatcctctgtgctccatgggttgactgatgttattcaggttggggaa
gggctggacatgacataccccccatgcgattacctcccctacaacgtggagcatcttgat
gaggacagagacggagacagatttgtggatgtgggcacacctaaactcagcagaaggcta
gaggagacactgagtgaggacgatggtgtttactctgacatggaccctccaaactggcag
cagcttgtgaaaatggaggttctagctgaactgacgccccaggagatcaagagacaggaa
gttattaatgagctgttctacacggagcgtgcacacgtgcgcacgctgaaagtcctggac
aatgtcttctaccaaaagttgacccgtgacagcatattaccacctgccgacatcaaaaac
atcttcagcaacctggaggagatcatccagctccatgtgatgatttcagagcagatggca
gccatacgtaaaaggaatgaaacgtcagtggttgacaaaattggagatgatttgctgtct
tggttcagcggagaggaggaggaaaagatgaaacatgcagtaggcaccttctgcagcaac
cagccctttgctctggagctcatcaagagccggcaaaagaaggaccagcgcttcctaacc
ttcatgcatgaggcagagagtaatcggatgtgccggaggctgcagctgaaggacatcatc
cctgccgagatgcaaagactcaccaagtacccattactgctggagaacatcgccaagtac
accggggatgcagaggagaaagataaggtgaggaaagcggctgattgctgtcgcaagatc
cttaaccacgttaaccaagcagtgaaggagtcagaaaataaacagcatctggaagactac
cagagacgcctggacctctccactctgaagcagagtgagaatcctctcatttccgagttt
aagaatctagatctcaccaagaggaagttgattcatgaaggaccactgacctggaaactg
aataaagacaagacagttgagttatacacattgcttcttgaggacatcctggtgctattg
cagaagcaagacgagagactcgttctgaaatgccatagtaagaaccgtgctggctcggcc
gacacgcagcacatcttcagccctgtcatcaaactcaatactgtactggtgcgctcagtg
gccacagacaacaggtccttctttgtgctctccatgtcggataacggagctcagatctat
gaactgatggcccaaacagtgtctgaacagagaatatggcagaggcatatcattcagcga
gcagaggcaatgaagtccaggccacacagtgtcattcccttgcctcagtctggaggggag
agaagtggagtcggagttggaaaacctgccaaagctccagagcgtgagtgttctagcaat
gctcaggcctcaggtaaagcccatgatgcagcatctgatcgtgccgccaacaatgaggag
caggagcaaattcgggcacatggccatgatgaaagctcttatccagagccggagctgttg
gctggctgtgacacagactttccatcctcttcctgcagagccgacgaagctctgaaaaca
ttggcagctttaaaacaggtgctggtaactcagctgatggcccagaacgacggggagagg
atgggccggcgtcttctcaggacaacgtctttgcgcacatcatgcaggactcaggacgcc
tcctcaggggacacaggtttttatgaaggcactgaggactatggcttgtccgtacgtgtg
attgaagcaggctacctgctgctggagggctctggtggctccgagggcagtactgatgat
aacgtacagtacaggaggaaggagttgggtctttcccgtggctgcgctgctgactcgggt
atcagcctcaggttttcatcatcctcagcagagagcttatgtggcatcagcagacaggtt
ctcacatacctgcgctctctgcaagccaacctcaatcacctcaaggagctagagagcaga
tattatctgttaaggcaaaaacaagaatcagcagacactgggggaaacaaaggtgccatc
aacctttccgtttttattgaactgctgtga
DBGET
integrated database retrieval system
