Ictalurus punctatus (channel catfish): 108277923
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Entry
108277923 CDS
T04658
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108277923
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108277923
Enzymes [BR:
ipu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108277923
Spliceosome [BR:
ipu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108277923
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
PWI
AAA_30
Flavi_DEAD
Cas3-like_C_2
nSTAND3
Motif
Other DBs
NCBI-GeneID:
108277923
NCBI-ProteinID:
XP_017346468
Ensembl:
ENSIPUG00000001025
UniProt:
W5UDV7
LinkDB
All DBs
Position
17:complement(17762172..17786674)
Genome browser
AA seq
1054 aa
AA seq
DB search
MANLEQWVSDRLHDILGLSDRYVAQFMIGLAQKSSAPQDFVARLQQTGTIDIDPRVTAFA
QELYNKVPKKQIVEKPSRAIERQVIEMERKNRTYTLLEDSDSDGEASREGGKEKKIREKD
RGKKRKHFRQKRDESPLSSEDDGKNSKSSSLEAKKAQKEDDEEEEWEKEERERLQDLEER
DAFAERVKQKDKDKTRHILERNDKKAYEEAQKRLKVADEDQKKMLPELRKQSRREYLSKR
EQEKLEDLEAEIIDEEYLFTSDNLTEREKKDLEYKKRIRDLARDYKTAGAKEKEERKNRY
YMPEEIRNKNIPQRDMELEFDEGYKEGGGEQGRWEEARVATATLQFGAREERERRIKEEK
EKYQLVLEEDEMINFVSTAITMKGTLSEKDNEPELSQAEKQKQSIQEVRRSLPIFPYRED
LLAAIRDHQILVIEGETGSGKTTQIPQYLLEDGYTQGGMKLGCTQPRRVAAMSVAARVAQ
EMAVKLGNEVGYSIRFEDCTSERTVLKYMTDGMLLREFLTEPDLASYSVIIIDEAHERTL
HTDILFGLIKDIARFRPDLKVLVASATLDTERFSCFFDDAPVFRIPGRRFPVDIYYTKAP
EADYLEACVVSVLQIHVTQAPGDILVFLTGQEEIEACCELLQERCRRLGSKISELIVLPI
YANLPSDMQAKIFNPTPPGARKVVVATNIAETSLTIDGIIYVIDPGFCKQKSYNARTGME
SLIVTPCSRASANQRAGRAGRVAAGRCFRLYTAWAFKHEMEETTVPEIQRTNLGNVVLLL
KSLGINDLIHFDFMDPPPHETLVLALEQLYALGALNHLGELTKLGRRMAELPVDPMLSKM
ILASEEYKCSEEVLTIAAMLSVNNSIFYRPKDKVVHADNARMNFVVPGGDHLMLLNVYTQ
WVESGYSTQWCFENFIQFRSMRRARDVREQLEGLMDRIEVELCSANGDNISIRKAVTAGY
FYHTSRLSKGGYKTVKHQQTVYVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIESGW
LLEVAPHYYKSKELEDSSSKKMPRKQGKAAEELG
NT seq
3165 nt
NT seq
+upstream
nt +downstream
nt
atggccaatctggagcagtgggtcagcgacaggctccatgacatcctgggcctaagtgac
cgatacgtggcccagtttatgattggcctggcgcagaaatcctccgccccgcaggacttt
gtggcacgtctgcaacagaccggcaccatcgacattgacccgagagtaaccgcgtttgct
caggagttatacaacaaggttccaaagaaacagattgtggaaaaaccatccagagccatc
gagcgccaggtgatcgagatggaacgaaagaacaggacctacactttgttggaggacagt
gacagcgatggagaggcatccagagaaggagggaaggagaagaagatcagagaaaaggac
agaggaaagaagaggaagcacttcaggcaaaaaagagacgaaagtcccttgtcgagtgag
gacgacggaaagaatagcaaatcgtcttcacttgaagcaaagaaagcccagaaagaagat
gacgaggaagaggagtgggagaaggaggagagagaaagactgcaggacttggaggagagg
gacgcctttgcagaacgtgtaaagcagaaggataaagacaagacgaggcacatactcgag
cgaaatgacaaaaaggcatacgaggaagcacagaagcgactgaaggtggctgacgaagat
cagaagaaaatgctgcccgagctgcggaaacagtcacggcgtgagtacctgtccaagcgt
gagcaggagaagctggaggacctggaggccgagattatagatgaggagtaccttttcacc
agcgataatctcactgagcgtgagaagaaagacttggaatacaagaaacgaatcagagac
ctggctcgagactataagactgccggcgcaaaggagaaggaagagaggaaaaaccgctac
tacatgcccgaggagatacgtaataaaaatattcctcagagggacatggagttggagttt
gatgagggctacaaagagggtggaggagagcaggggcgatgggaggaggcacgggtcgcc
acagccactctgcagttcggggccagagaggagcgagagcggcgtataaaggaggagaaa
gagaaataccagctagtgctcgaagaggacgagatgattaattttgtgagcactgctatc
accatgaaaggaacgctctctgaaaaggataacgaacctgagctatctcaggctgaaaag
cagaagcagtccatccaggaagtgagacgcagcctgcccatatttccctacagagaggac
ctcctcgctgccatcagagaccaccagatcctggttatcgagggtgagaccggctcaggc
aagacaacgcagattcctcagtacctcctagaggacggttatacccaaggagggatgaag
cttggttgcacccagcctcgaagagttgcagctatgtctgtagcagccagagtagctcag
gaaatggcagtgaagctggggaatgaggtgggttacagtatccggtttgaggactgcaca
tcagaacgcaccgtgctcaagtacatgactgacggcatgttgttgagagagttcctcacc
gagcccgacttggctagttatagtgtaatcatcattgatgaggctcacgagaggacatta
cacacagacatactgtttgggctgattaaagacatcgcacgtttccggccggacctgaaa
gtgctggtggctagcgctactctagacacggagcgtttctcctgtttcttcgacgacgct
cctgtgttcaggatcccaggccgcaggtttcctgtcgacatctactacaccaaggctccc
gaagccgattatctagaggcgtgtgtggtttcggtactacagattcacgtgacgcaggct
cctggagacatccttgtgttcctcacaggacaggaagagatcgaggcctgctgtgagctt
ctgcaggagagatgtaggaggcttggctcaaagatctctgagctcattgtgctccctatc
tatgccaacctgccctcagacatgcaagctaagatttttaaccccacaccacctggagct
cgcaaggttgtggtagccacaaacatcgcagaaacctcgctcaccattgacggcatcatc
tatgtgattgaccctggcttctgcaaacagaagagctacaatgcccgaacagggatggag
tctttgattgttacgccatgctcacgggcttcagctaatcagcgggcaggccgagcaggt
cgggtagctgcaggcagatgtttcaggctctatacggcctgggccttcaaacacgagatg
gaggaaaccacagttcctgaaatccagaggaccaacctgggcaacgtggtcctgctcctg
aagagtctgggcataaatgatctgatccattttgacttcatggaccctcctccacacgaa
accctggtgctggcacttgagcagctttacgccctgggtgcccttaaccacctcggagaa
ctcactaagttggggaggaggatggctgagctgcctgtcgaccccatgctgagtaaaatg
atcttggcttctgaagagtataaatgctcagaggaggtgttgactatcgccgccatgttg
tcagtcaacaactccatcttctacaggccaaaagacaaggtggtgcatgcggacaatgcc
cgaatgaactttgtggtgccgggaggagaccatctgatgctcctcaatgtttacactcag
tgggtggagagtggttattccacacagtggtgttttgaaaactttatccagtttcgctcg
atgaggcgggcacgtgacgtgagggagcagctggaggggctgatggacagaatcgaggtg
gaattgtgcagcgctaacggtgacaacatctccatccgcaaggcagtcacagcgggttat
ttctaccacacgtctcgtctcagtaagggaggctacaaaactgtgaagcaccagcagacg
gtgtatgtgcaccccaacagctcactgtttgaggaacagccacgctggctcatctaccat
gagctagtcttcaccaccaaggagttcatgagacaggtgattgagatagaaagcggctgg
ctcttagaggtggctcctcactactacaagagcaaagagctggaagacagcagcagtaag
aaaatgcctcgcaaacagggcaaagctgcggaggagctcggctga
DBGET
integrated database retrieval system
