Ictalurus punctatus (channel catfish): 108277987
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Entry
108277987 CDS
T04658
Symbol
ptbp2b
Name
(RefSeq) polypyrimidine tract-binding protein 2b isoform X1
KO
K14948
polypyrimidine tract-binding protein 2
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108277987 (ptbp2b)
Spliceosome [BR:
ipu03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
108277987 (ptbp2b)
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GFIT
Motif
Pfam:
RRM_5
RRM_1
RRM_occluded
RRM_8
RRM_PARP14_3
GlcNAc-1_reg
RRM_Nup35
Motif
Other DBs
NCBI-GeneID:
108277987
NCBI-ProteinID:
XP_017346565
Ensembl:
ENSIPUG00000019002
UniProt:
A0A2D0SW68
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Position
17:complement(18680112..18701717)
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AA seq
518 aa
AA seq
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MDGIASDVAVGVKRSSDDLLSGSLYSSPNTSVKANGSDSKKLRVEDSMENPPSRVIHIRK
LPNEVSETEVIALGLPFGKVTNILMLKGKNQAFLELGTEEAAITMVNYYTAVTPQVRNVP
VCIQYSNHKELKTDSALNQRAQAVLQAVCAVQEGGSPSSDSAGESVLIPPPSPVLRIIID
NMFYPVTLDVLQQIFSKFGTVMKIITFTKNNQFQALLQFSEPVNAQQAKLSLDGQNIYNS
CCTLRIDFSKLVNLNVKYNNDKSRDYTRPELPAADGQPSVDPAMAAALGKDSTSLLGSIS
PLSAAAAAAAAAGRVALSGHSAAGAVLLASNLNDEMVTPQSLFTLFGVYGDVQRVKILYN
KKDSALIQMTDGNQAQLAMSHLNGQKMFGKIIRVTLSKHQTVQLPREGLDDQGLTKDFIN
SPLHRFKKPGSKNFQNIFPPSATLHLSNIPEKVNEEDLRLLFSNSGGTVKAFKFFQDRKM
ALLQMATVEEAIQALIDLHSYDMGRGHRLRVSFSKSTI
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atggacggcatcgctagtgatgttgcagttggtgtaaagagaagttcggatgatttgctt
tctggcagtctttacagcagtccaaacacttcagttaaggctaatggaagtgatagcaaa
aaactgcgagtggaggacagcatggaaaacccgccctcgagagtcattcacattcgtaaa
ctcccgaacgaggtttctgagacagaagtcattgccttgggcctaccctttgggaaagtc
accaatatcctgatgctgaaaggcaaaaatcaggcatttttggagctcgggacagaggaa
gcagcgatcaccatggtgaactactacacagcagtgacccctcaagtgcgaaatgttcct
gtgtgtatccagtactccaaccacaaagagctcaaaacagacagtgcactcaatcagcgt
gcccaggccgttctgcaggcagtgtgcgccgtacaggagggaggttctccgagctcagat
tcagcaggagagagcgtgttaataccgccgccaagtccggttttacgcatcatcatcgat
aacatgttctacccggtaacactggacgtcctgcagcagatcttctccaagtttgggacc
gtgatgaagataatcacattcaccaaaaataatcaattccaagcgctgctgcaattcagc
gagcctgtaaatgcacaacaagccaaactgtctttggatggacagaacatctataactcg
tgctgcacgctgcgcatcgacttctccaagctggtcaacttaaacgtgaagtacaacaac
gataagagtcgagattatacaagacccgagctgcctgcagcagacggtcagccttctgta
gatccagcgatggccgctgcacttggcaaagactccacatccctgcttgggtcgatcagt
cctctaagtgcggcggccgcagcagcggcagcagctgggcgggtcgctctgtcaggacac
tcggcggctggtgcagtgctgctagccagcaatctcaatgatgagatggttacgccccaa
agtctctttaccctcttcggtgtgtatggggatgtgcaacgtgtcaagatcctctataat
aagaaggacagcgccctcatccagatgaccgatggaaatcaggctcagcttgccatgagc
cacctgaatgggcagaagatgtttgggaagatcatccgtgtgaccctttccaaacaccag
actgtgcagcttcctcgagaaggcttggatgatcagggcctcactaaagacttcatcaat
tcaccccttcatcgtttcaaaaagcctggctcaaagaatttccagaacatctttcctccg
tcagccactctccatctttccaacatccctgagaaggtgaatgaagaggacctgagactt
cttttctccaactctggaggcacagtgaaggccttcaagttctttcaagatcgcaagatg
gcccttctgcagatggcgacggtggaggaggccattcaagccctgatcgacctccatagc
tatgatatgggccgtggccatcgcctcagagtctccttctccaaatccaccatatga
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