Ictalurus punctatus (channel catfish): 108278011
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Entry
108278011 CDS
T04658
Name
(RefSeq) serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit alpha isoform X1
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03015
mRNA surveillance pathway
ipu04261
Adrenergic signaling in cardiomyocytes
ipu04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108278011
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
108278011
09158 Development and regeneration
04382 Cornified envelope formation
108278011
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108278011
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108278011
03036 Chromosome and associated proteins [BR:
ipu03036
]
108278011
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108278011
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108278011
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108278011
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
P2R3B_EF-hand
EF-hand_7
EF-hand_5
EF-hand_6
EF-hand_1
DUF4116
Motif
Other DBs
NCBI-GeneID:
108278011
NCBI-ProteinID:
XP_017346613
Ensembl:
ENSIPUG00000008145
UniProt:
W5UHW3
LinkDB
All DBs
Position
17:complement(25337309..25394090)
Genome browser
AA seq
1168 aa
AA seq
DB search
MAATYRIVVSSINYYNSVVVDRRVQQTVHYCNGPCGAIKHGLSCTVAHRSTCAELLDSSQ
TYTDRPIGYHESASKMLENGGCGHVGFGEDFHYQVVPRVKKGSAIQSSTSLKDITGEAIN
LASGKMKEFSFEKVKYSSSHVTFRKGRKVRPDSFSRRSADLDVIYGHFGNDENCPPQKAA
PDEQKLNRSISLEQNLNNAASFYLNNLTEENLIARILEKTKTDSNASGEDIKACLDILLK
CSEDLKKCTDIIKQCIKRKSMSGDGEDSGNPDAIYKTMMARLSSYLKRLPFEIDLGHTGR
PEHNDLSELVNTLHGLQQRPFSPFGNEQPPRYEDVVQSPPSTKVQSKASSCSSPESLDGT
RDLPGSLTSAQGLAVSLPSHSSANGLQYSNLPSSTGSTKPSTLHYPISTGRHDASSSTNS
ISKDTSMETLYIEEDADVGRALDRKQGSSASESRQLSRRHDIISGPSAGITDKLPDLSRN
GTVYTPNVETGSSQAYTPSHSTESRMLTNSTPHITREGVDEIDKLLMDLECLSQNIQKEP
PLPPKQRQINAYQKNMHQIGSSGINGPPCPNPPAISSAKSTNRNTEEAGEEDDGALLLRI
LESIESFAQELVDCGAGTGTQSKECEVMRLLQDTLAKTELASEIVPASETAPGLSPAATP
IASATPVPVAVPSATPAKVLSPFISARDTGSTILIQQTPEVIRIQPEKKPVSPPPPPIPR
SPSPPPPAPPPPSINIPRFYFPTGLPNLIVNIDEAIAKVEAAFAKLQEEKADIYEMGKIA
KACGCPLYWKAPMFNCAGGERTGFVSVHSFIATWRKLLHSCYDDASKFVYLLAKPGCTYL
EQEDFIPLLQDIVDTHPGLTFLKDAPEFHSRYITTVIQRIFYTVNRSWTGRITMTELRRS
NFLQTLALLEEEDDINQITDYFSYEHFYVIYCKFWELDTDHDLFIDPKDLSRYNDHASSS
RIIERLFSGAVTRGNSVQREGRMSYAEFVWFLISEEDKKNPTSVEYWFRCMDMDGDGVLS
MYELEYFYEEQCERMEGMGIEPLPFQDLLCQMLDLVKPESQGKITLRDLKRCRMAHIFFD
TFFNLDKYLDHEQKDPFSVQKDVDSEGPEPSDWDKYASEEYEILVAEETVSEQLHDGSFE
DDYECEELPITSEIGNKMDKLVISDLSP
NT seq
3507 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacctatcggattgtggtcagcagtataaactattataacagtgtcgtagtg
gaccgacgtgttcagcagaccgtgcattactgtaacggaccatgtggagcgataaaacat
ggacttagctgcactgtggctcatcgtagtacctgtgctgaactgttggattcctcccag
acgtacactgaccggccaatcggctaccacgaatctgcatcgaaaatgcttgaaaatggt
ggatgcggtcatgttggatttggtgaggatttccattatcaggtcgttccacgagtgaag
aaaggatctgctatccagagctcgacgagcctgaaggatatcaccggagaggcgatcaac
ttggccagcgggaagatgaaggagttctccttcgagaaggtgaagtactcctctagtcat
gtgaccttcaggaaaggtagaaaggtaaggcctgactcgtttagccggaggtctgccgac
ctcgacgtcatctacggacacttcggcaacgatgaaaactgtcctccgcagaaagcggca
ccggatgagcagaagttgaaccgaagcatctcactggagcagaatctgaacaatgcagcc
tcattttatctcaacaacctcacagaggagaacctcattgcccggattctcgagaagacc
aaaacagacagcaatgcttctggggaagacatcaaagcttgtttggacatcctactcaag
tgctcggaggatctgaagaagtgcacagacattataaagcagtgcataaagaggaagtcc
atgagcggagacggtgaggattctggaaatccggatgctatttacaaaaccatgatggcg
cgactctcaagctacctaaagaggctgccgtttgagattgaccttggacatacaggaaga
ccagagcacaacgatctatctgaactggtgaacactctccatggacttcagcaaaggcct
ttctcaccttttggcaatgagcagcctcctcgatatgaggatgtggtccagtcccctcca
tcaacaaaagtccagtctaaagcctcatcttgctcatctccagagtctcttgatggcacc
agggatctcccaggaagtttaacatcagctcaaggcctcgctgtatcactcccttcccat
tcatctgcaaatggactgcagtattccaaccttccctcttccactggcagcaccaaaccg
tccacccttcattatcccatctccactggccgccatgatgcctcctcctccaccaacagc
atatccaaagacacctccatggagaccctgtacatcgaggaggacgctgacgtaggtcga
gcactggataggaagcagggatctagtgcttcagagtccaggcagctttcaaggagacat
gacataatatcaggtcccagtgctggcatcactgacaaacttcctgatctcagtagaaat
ggaactgtatatacacccaacgtggagacaggaagtagccaagcttatacaccatcacac
agcaccgagtcaaggatgctcacaaattcgactccacacatcaccagggaaggtgtagat
gagattgataaactactaatggatttggagtgtctctctcagaacattcagaaggaacca
ccactaccaccaaagcagagacagataaatgcataccaaaaaaatatgcaccagattggc
tcctcggggattaacggccccccttgtccgaatcctcctgccatctcgtccgccaagtca
acaaatcgcaacacggaagaagccggcgaggaggacgatggcgctctcttgctacggatc
ctggagagcatcgagagcttcgcccaggagctggtggattgtggagccggaacaggaact
caatcaaaagagtgtgaggtgatgcgcctccttcaagacacattggctaagactgaactg
gcttcagaaattgttcctgcatcagaaacggcaccaggactttcacctgcagccacacct
atagcttcagctacacctgtacctgtagctgtaccctcagcaactcctgctaaagtcttg
agtccgttcatcagtgcgagagacacgggatctactatactcatccagcagacgccagaa
gtcatcaggatccagccggagaagaaacccgtctctcctcctcctcctcccatccctcgt
tctccttctcctcccccacctgccccccctcctccctccattaacattccacgcttttat
tttcccacgggtctcccaaacctcatcgttaatatcgacgaggccatagcgaaagtcgag
gcggccttcgccaagctgcaggaggaaaaggccgacatctacgagatgggcaagatcgcc
aaggcatgcgggtgtccgctgtactggaaggccccaatgtttaactgtgcaggaggagag
aggactggcttcgtctctgtccattcatttatcgccacatggcgaaagttgttacacagc
tgctatgatgatgcgtccaagtttgtttacttgctggccaagccgggctgcacgtacctg
gaacaggaagacttcatccccctcttacaggacatcgtggacactcatccgggtctgaca
tttttaaaagatgctcctgaattccattcccgctacatcaccaccgtgatccagaggata
ttttacacagtgaatcgctcgtggacaggcaggatcaccatgacggagctcaggagaagc
aacttcctgcagactctggccctgttggaggaggaggacgacattaatcagatcactgat
tatttctcttatgaacacttctatgtcatttattgtaagttctgggagttggacaccgac
cacgacctcttcatcgaccccaaagatctctcccgctacaacgaccacgcttcatccagc
aggatcatcgagaggcttttctcaggagctgtcactcggggaaactctgtgcagagagaa
ggacgtatgagttatgctgagtttgtgtggttcctcatctcagaagaggacaagaagaac
ccgacaagtgtggagtactggttccgctgtatggatatggatggcgatggcgttctctcc
atgtatgagctggaatatttctatgaggaacagtgtgagcggatggaggggatgggaata
gaaccgctgcccttccaagatctgctgtgccagatgcttgatctcgtcaaaccagagagt
caaggtaagatcactctgcgtgatctgaagcgctgcaggatggcccacatcttcttcgac
acgttctttaacctggataaatacctggaccatgagcagaaagacccgttctccgttcag
aaggatgtggacagtgagggtccggagccctcagactgggataaatacgcatcagaggaa
tacgaaatcctggtagcggaggagactgtcagtgagcagctgcatgacgggtcttttgag
gatgactacgagtgtgaggagcttcctattacatctgagatcggaaacaaaatggacaaa
ctggtgatctccgatctgtccccatga
DBGET
integrated database retrieval system
