KEGG   Ictalurus punctatus (channel catfish): 108278020
Entry
108278020         CDS       T04658                                 
Name
(RefSeq) DNA repair protein XRCC1 isoform X1
  KO
K10803  DNA-repair protein XRCC1
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    108278020
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ipu03400]
    108278020
DNA repair and recombination proteins [BR:ipu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Short Patch-BER factors
     108278020
SSDB
Motif
Pfam: XRCC1_N BRCT BRCT_2 PTCB-BRCT LIG3_BRCT
Other DBs
NCBI-GeneID: 108278020
NCBI-ProteinID: XP_017346629
UniProt: A0A2D0SVB7
LinkDB
Position
23:complement(20685461..20698204)
AA seq 610 aa
MPEIKLKHVVSCSSEDNTHKADNLLSSETYRKWKSARPGEKQVSVIMQFEKEEQVHSIDI
GNEGSAFIEVLVGHSTSVKDQDFEVLLVTSSFMSPSESRGNSNLNRVRFFGPQQLVKSTS
QEKWDRVKIVCTQPYNKNIAYGVAFIKFHSPPDNNTPAVTPPKLTKLGQFRVKEESQSPG
SNLQPGSLFLSRENKEVAGVKVSPKNTSLSYAAAALQTEPSTSSSAASSSPQAAVSVKRK
FEFSKERQDAPPPPTKKHTPPPKPITETAEHTHTSMSTKTAPFSQKSLVRKSSVKPRPRA
SEPIPFNRMMEGVVFVLSGFQNPFRAELRDKALSMGARYRPDWTPDSTHLICAFANTPKY
GQVKAAGGLIVRKEWVMDCHKRKQKISYKRYLIDGAESSSEEEEGEDSAAEELRPDEEKK
KKSLEKRHSASMKSVREERSDGAVDEREEEDDDDDDDDGSGMDTEDELSRVEKRREEKAG
QEDRGSGGGEEMEDDQYGGSTDENTDAEEEEDKPIPELPDFLTGKRFYLYGKFPENQRRL
LQRYIIAFNGAVEDYMNEKVQFVITSQGWDDTFEDALMENENLSFVKPTWIFAINDRQKM
LPYQPYTVVP
NT seq 1833 nt   +upstreamnt  +downstreamnt
atgccggagattaaactgaaacatgtggtgtcctgcagcagtgaggacaatacacataaa
gctgataacctgttgagctccgagacgtacaggaagtggaaatccgctcgtccaggagag
aaacaagtttcagtcattatgcagtttgagaaggaggagcaggtccacagtattgacatt
gggaatgagggatcagctttcattgaagtgctcgttggacattcgacctccgttaaagac
caggattttgaggtgttgttggtgacatcgtcgttcatgtctccctctgagagtcgaggg
aattcgaacctgaaccgtgtccgattcttcggccctcagcagcttgtgaagagcacgagt
caggagaagtgggacagagtgaagatcgtctgtacacaaccctataacaagaacattgct
tatggagtggcgtttataaagtttcactctccgccggataacaacactcctgctgttaca
cctcctaagttgactaaactgggtcagttccgggtgaaggaggagtctcagtcccccggg
tcgaacctgcagccggggagtctcttcctgagccgagagaataaagaggttgcaggagtg
aaggtttctcctaaaaacacttcactgagttacgcagcagcagcactacagactgagccc
tcaacctcaagctccgctgccagcagctcaccacaggctgctgtatctgtgaagagaaag
tttgagttcagtaaagagagacaggatgccccccctccccccaccaagaaacacacacct
ccacccaaacccatcacagagactgctgaacacacacacacctccatgagcacaaaaaca
gcccccttttcccagaagtccttggtgcggaagtcctctgtcaagccccgcccccgggcc
tcagaaccaatcccctttaaccgcatgatggagggtgtggtgtttgtgctgagtggattt
cagaacccgttccgtgcagaactccgagacaaggctctgtccatgggggcgcggtaccga
ccagactggaccccggactccacacacctcatatgcgcctttgctaacacccctaagtac
ggtcaggtgaaggcagcagggggactgattgtgcggaaggagtgggtgatggactgtcac
aagaggaaacagaaaatctcctacaaaaggtatctgatcgacggagcagagtcgagctcg
gaggaagaggaaggggaggacagcgctgctgaggagctgagacctgatgaggaaaagaaa
aaaaagagtcttgagaagagacacagcgcttccatgaaatcagtgagagaggagaggagc
gacggagcagtggacgagcgagaggaagaggatgatgatgatgatgatgatgatggatcg
ggcatggacactgaagatgagctgagcagagtggagaagaggagagaggagaaggcagga
caggaggacagaggaagtggaggaggagaggagatggaggatgaccagtatggaggctct
acagatgagaacacagacgcagaagaagaggaagacaaacccattccagagctaccagac
tttctgacaggaaagcgtttttatctttatgggaagtttccggagaatcagcgacgcctg
ctgcagcgttacatcatcgcctttaacggtgctgtggaggactacatgaatgagaaggtc
cagtttgtgatcaccagtcagggatgggacgacaccttcgaggacgctctgatggagaac
gagaatctgagttttgtgaagcccacgtggattttcgccattaatgatcggcagaagatg
ttaccctatcagccctatactgtcgtgccctaa

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