Ictalurus punctatus (channel catfish): 108278142
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Entry
108278142 CDS
T04658
Name
(RefSeq) transcription initiation factor IIB
KO
K03124
transcription initiation factor TFIIB
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108278142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108278142
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIB
108278142
Prokaryotic type
Archaeal type
TFB
108278142
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TFIIB
Zn_Ribbon_TF
Cyclin_N
Cyclin_C
RB_B
BRF2-like_C_cyclin_rpt
Sigma70_r4
KIF9
Harpin
Motif
Other DBs
NCBI-GeneID:
108278142
NCBI-ProteinID:
XP_017346825
UniProt:
A0A2D0SWY3
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All DBs
Position
17:20329424..20334730
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AA seq
316 aa
AA seq
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MASTSRGDALPKVQCPNHPDAMLVEDYRAGDMICPECGLVVGDRVIDVGSEWRTFTNEKA
TKDPSRVGDAQNPLLNGGDLTTMIGKGTGSASFDEFGNSKYQNRRTMSSSDRAMLNAFKE
ITTMADRINLPRNIVDRTNNLFKQVYEQKSLKGRSNDAIASACLYIACRQEGVPRTFKEI
CAVSRISKKEIGRCFKLILKALETSVDLITTGDFMSRFCSNLGLPKHVQMAATFIARKAV
ELDLVPGRSPISVAAAAIYMASQASAEKKTQKEIGDIAGVADVTIRQSYRLIYPRAADLF
PPDFKFDTPVDKLPQL
NT seq
951 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgaccagccgtggagatgctcttcccaaggttcagtgccctaatcaccccgat
gccatgctggtggaggattaccgagccggcgacatgatctgcccagagtgtggcctcgtc
gtcggtgaccgtgtgatcgacgttggatcagagtggaggacattcacgaatgaaaaagct
accaaagacccatcacgtgttggcgacgcccagaacccactcctcaacggaggagacctc
actacgatgattggaaagggaacgggttctgcgagtttcgatgagttcggcaactccaag
taccagaaccggaggacgatgagcagctcagacagagccatgctgaacgcctttaaagag
atcaccaccatggcagacaggataaacctgccccggaacatcgttgatcgtacgaataac
ctgtttaagcaggtgtatgaacagaagagtctgaagggcaggagtaatgacgccatcgct
tcggcatgcctctacatcgcgtgcagacaggagggagttccccgaacgtttaaagagatc
tgtgctgtgtcccggatttccaagaaagagatcggccgctgctttaagctcatcctgaag
gctctggagacgagcgtggacctcatcaccaccggagacttcatgtcccgcttctgctcc
aacctgggcctgccgaagcatgtgcagatggcagctaccttcatcgccaggaaggccgtg
gagctcgacctggtcccgggacgcagcccaatcagcgtggctgctgccgccatctacatg
gcctctcaggcctcggccgagaagaagacgcagaaagaaatcggagatatagccggagta
gccgatgtcaccatccgccagtcgtaccgtctcatctacccacgtgctgctgatctcttc
cctccagacttcaagttcgacacaccagtggataaactgcctcagctgtga
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