Ictalurus punctatus (channel catfish): 108278214
Help
Entry
108278214 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase RNF169
KO
K20805
E3 ubiquitin-protein ligase RNF169 [EC:
2.3.2.31
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108278214
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108278214
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
108278214
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
108278214
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
Other DSBR factors
Ubiquitin ligases
108278214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4
zf-C3HC4_3
zf-RING_2
Prok-RING_4
zf-RING_UBOX
zf-RING_4
Motif
Other DBs
NCBI-GeneID:
108278214
NCBI-ProteinID:
XP_017346912
UniProt:
A0A2D0SW43
LinkDB
All DBs
Position
17:complement(13901823..13907850)
Genome browser
AA seq
657 aa
AA seq
DB search
MQVRKQLKMAAAGCAGSVSGPGQQAKARPGAVSNHRHVRCLTLEEARCPVCLEILLEPVT
MPCRHSVCLQCFKRTVECSGLCCPSCRLRVSSWARNKQSREKSLVNTELWEMVRQTYPER
CGRRLEQRDRVIATEDVFCSPIQICKPGDMRHEYDKQKNKMMKDEETEDRMKKLPCRKKG
ESGLQHSQDTSLVLSDSENEQPMRMRTRHASAFVRRSRFSPSFCKSLYNIGVQRSQSCTD
SEEGRRKIRAQSHLSLPEKASICHSFNAGILLSSENSRSFSAPVLPLDKRHHWRSILASP
PSSLVPHTKPERSVSPESNDSISEELNHFKPIVCSPCTPPKRLPDGRLMEPTIVKSTPRN
LTHNLQKSTSYEASPSILQKWKQVELDRQRVKFMSKGTITSPVADDYSITQSSEEDQENK
SCNCGPMEKGSTLQGQHCNCTANTNLSRKQRGKSLLYNKRQLIFDQCNRDDGSQSTNAHP
TLMALGNSDTHNQCGALEPHCSLSGQVENLKSPIVDKHIGVSHNQGIEDLQDLRNDPTVR
SCVLNRPTSKRGKKRSQKTKHLEEAKRIKISKIESCDSCDPQYRQNDLYVEQIHQERMDR
ELALKLQRQFDKEGQKVERHRMSSDKYLLRSWICVDGRASRNPRRSGRISRKIKHFN
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atgcaagtaagaaagcagctgaaaatggcggcggcggggtgcgccgggtctgtcagcgga
ccgggacagcaggctaaagcgaggcctggagccgtttctaatcatcgtcatgtgcgctgt
cttactctggaggaagctcggtgtccggtttgcttggagatattactggagcccgtgact
atgccgtgtagacactcggtctgcctccagtgttttaagcggacggtggagtgtagcgga
ctgtgctgcccgtcctgccggctgcgtgtgtccagctgggcccgaaataaacagtcccga
gagaaaagcctcgtcaacaccgagctctgggaaatggtgcgccaaacttatccggaacga
tgcggccgtagattagagcagcgggaccgagtgattgctacggaagatgttttctgttca
cctatacagatatgtaagcctggagatatgcggcatgagtatgataagcaaaagaataag
atgatgaaggatgaagaaactgaagatagaatgaaaaaattaccctgccgtaagaaaggg
gaaagtggactgcaacattctcaggatacttctttagtgttgtccgactctgagaacgaa
caacctatgagaatgagaaccaggcatgcatcagcatttgtgcgccgatcaaggttttcc
ccatctttttgtaaaagtctgtacaacatcggtgtacaaaggagccaaagttgtactgac
tctgaggaaggaagaagaaaaatcagagctcagtcacacctttctttaccagaaaaagcc
agtatctgtcatagtttcaatgcaggaatactcttatcctctgagaacagtcgttccttc
tcagcaccagttcttccccttgacaagaggcatcactggcgttccatcttggcctctcct
ccttcctctttagtgcctcatactaaacccgagcgttcagtcagcccagagagcaacgac
agcatctcagaagagctgaaccacttcaagcccatagtttgttcaccgtgcacgccaccg
aagagactaccagatggccggttaatggaacccaccatagtaaagtctacacctaggaac
ctgacccacaacctgcagaaaagcaccagctatgaagccagtcctagcatcctgcaaaag
tggaagcaggttgagctagatcggcagcgtgtcaagttcatgtccaaaggaaccatcacc
agtccagtggcagacgattacagcatcacacagagctctgaagaagaccaagagaacaaa
tcttgtaactgtggtcccatggaaaaaggctcaacattgcagggtcaacattgtaattgt
actgcaaatacaaacttgtctagaaagcagaggggaaagtctttgctgtacaataagcgg
cagttgatttttgatcagtgtaacagagatgatggctcacagtctacaaatgcacatcct
acattgatggcattgggtaattctgatactcacaatcagtgtggtgctcttgaaccacac
tgttcactttcaggacaggttgaaaacttgaaatcaccaatagtggacaaacatatcgga
gtaagtcataatcagggaatagaggaccttcaagacttacggaatgatccaactgtcaga
agttgtgtacttaacagacctacctcaaaaaggggcaaaaagaggagccagaagaccaaa
catttggaagaggcaaagagaataaaaatatccaaaatagaaagctgtgatagctgtgac
ccacaatatagacaaaatgatttatatgttgaacagatccatcaagaaagaatggacaga
gaactggcactaaagctacaaagacagtttgacaaagaaggccagaaagtagaaaggcat
aggatgagttctgataaatatcttctacggtcctggatttgtgtagatggtagagcatct
cgtaatccacgcaggtcaggaaggatttctaggaagataaaacactttaattaa
DBGET
integrated database retrieval system
