Ictalurus punctatus (channel catfish): 108278234
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Entry
108278234 CDS
T04658
Symbol
srsf1a
Name
(RefSeq) serine/arginine-rich splicing factor 1A
KO
K12890
serine/arginine-rich splicing factor 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
ipu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108278234 (srsf1a)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108278234 (srsf1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108278234 (srsf1a)
Spliceosome [BR:
ipu03041
]
Common components
Common spliceosomal components
SR proteins
108278234 (srsf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_3
RRM_7
Nup35_RRM_2
CoV_nucleocap
PRP38_assoc
Motif
Other DBs
NCBI-GeneID:
108278234
NCBI-ProteinID:
XP_017346942
Ensembl:
ENSIPUG00000017039
UniProt:
A0A2D0SW74
LinkDB
All DBs
Position
17:complement(5408574..5411530)
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AA seq
252 aa
AA seq
DB search
MSGVIRGPAGSNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLKNRRGGPPFAFVEFE
DPRDAEDAVYARDGYDYDGYRLRVEFPRSGRGMGRGGFGGGGGGGGGGGGAPRGRYGPPS
RRSEYRVIVSGLPPSGSWQDLKDHMREAGDVCYADVFRDGTGVVEFVRKEDMTYAVRKLD
NTKFRSHEGETAYIRVKVDGPRSPSYGRSRSRSRSRSRSRSRSNERSRSYSPRRGRSSPQ
YSPRHSRSRSRS
NT seq
759 nt
NT seq
+upstream
nt +downstream
nt
atgtctggagtgatccgaggccccgctgggagcaacgactgccgaatttatgtgggaaat
cttcctcctgatatccgcacgaaagacgtcgaggacgtgttttacaaatacggagcgatc
cgagatatcgatctgaaaaaccggcgaggtggccctccgtttgcctttgtcgagtttgag
gaccccagggatgccgaggatgcagtttacgctcgggatggttatgactatgatggctac
cggcttcgagtggagtttcccagaagtggacgcggtatggggagaggaggctttggtggt
ggtggaggcggtggcggcggtggcggcggagctccccgaggcagatacggacctccatcc
aggcgatctgaatacagagtgattgtttcagggttaccaccgagcggcagctggcaagat
ctgaaggatcacatgcgtgaagcaggtgatgtatgttatgctgatgttttccgagacggc
accggtgtggtggagtttgtgcgcaaagaagacatgacctacgctgtgcgaaaactggat
aacactaaattccggtcacatgagggggaaactgcatatatccgtgtgaaagtggatggt
ccacgcagtccaagttacggaagatcaaggtcccggagccgcagtcgcagcagaagtcgc
agtcgcagcaatgagcgtagccgtagctattcgccacgccgtggccgaagctccccacag
tactccccccggcacagccgctctcgctctcgttcctaa
DBGET
integrated database retrieval system
