Ictalurus punctatus (channel catfish): 108278281 Help Entry 108278281         CDS       T04658                                  Symbol dchs1a Name (RefSeq) protocadherin-16   KO K16507   protocadherin-16/23 Organism ipu  Ictalurus punctatus (channel catfish) Brite KEGG Orthology (KO) [BR:ipu00001]  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    04515 Cell adhesion molecules [BR:ipu04515]     108278281 (dchs1a) Cell adhesion molecules [BR:ipu04515]  Cadherins   Cadherin related    108278281 (dchs1a) BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Cadherin Cadherin_CELSR2_9th Cadherin_2 Fibulin_C RET_CLD1 Cadherin_pro Cadherin_4 RIFIN CADH_Y-type_LIR DUF5658 Motif Other DBs NCBI-GeneID:  108278281 NCBI-ProteinID:  XP_053543237 UniProt:  A0A9F7RU57 LinkDB All DBs Position 17:complement(23981670..24102306) Genome browser AA seq 3284 aa AA seqDB search MKKVLTGVGSTVMDQIHQHRTWDSRLLVLLCVALQFFTAHSSMVPGTLELQLDEEQPAGT VVGDISAGLPPGVTASLYFISDHEGTGVGTDLDIDESTGIIRTAKVLDREIRDHYNFIAV TMTAETVEVTILVNDINDHAPVFPRKRASFKIPEQTTIGTKFPLEPALDADKDQLTTQGY IITDGNVGQAFLLETRRGSNQVLYLDLVVNAILDREKRSSYTLVLEAFDGGSPKKTGQMV LDVTVQDINDNAPVFNQSRYHAMISENLQPGNNILQVFASDADEGDNGLVLYEINRRQSD PDRYFVINSQTGIITLNKPLDYEMRKVHELVVQARDNATQSEVTNAFVTIHVRDYNDNQP TMTIIFLSEDGSPRISEGAQPGQYVARISVTDPDYGEYSNVNVSLEGGDGKFALTTKDNI IYLICVDEILDREERDRYELRVMATDSGTPPLRAESSFTIQVTDVNDNPPLFVQQEYTQV IPEVIFPGSFVLQVTARDKDQGPNGDVQYSILQNLETHSDWFSIDAITGIITTLTQLDYE TDPTPSLIVVAMDRGRPPLSSTAVVKVILQDINDNEPVFGSKFYNASLKENTAAGTCFLE VKARDADGGSFGSVSYSLGSGPGSLAHPHFTIKKESGQICTSASLDRDQGPASYDFTVTA VDGGGLSSVAYVHVDLVDVNDNWPTFYPVHYAVSLSTQSSPGTSVIRVTAHDPDAGENGR VMYRTAPGGSSPFFTLNKDTGVISLSRSLHGKANTVIAMVVSAQDGGGLTAPVNAKVNIS IVAGLVAPPVFEQAQYYFTVSEDALRGTQVGTVRASTKNGVSKDVSYTICSGDPTGYFTV DPETGILRTSLPLDHELQPIVELEVQAQSGNPPAFGQTRVHITVVDVNDNAPTFIPSSSE SLILLDDTRMGTVVYKIQAEDLDSGPNGALTFDLLPSGAQRTFNVDRSSGEIRLIASLSY ETVPRYDLQVLAKDMGAPQLSAMFTLVVHVQAENGQGPVFDTLSYRVELKEGTPLNTRFL QVRALNRDGGITSGSGATVPLAYHLQPDGDAAGFGIVSDSGWLFVKSALDREVKEVYLLT VLATSGHGQLKKTGSATVRISVMDENDNSPRFTQERAFLAVRENLPAGSGFGRVPATDRD AGLNSRLIYRLLHPDRHFQINSHTGEISTRVALDREHQSSYQLVVVVQDSGTPPRSATGT AFITVLDENDNAPFFTRRDLLMQVLEGQPSGVLLGTVTAKDPDEGENGTVFYSLSGLRAE RFSLHPITGELHSSSPLSHAERPEYTFSVMATDRGSPPRSSTATLRIQVLSSNKGTSTSN LVSISFNPVEGAKPGSVIGSVRTPDTQSLPESGQVTYTVVGGTDRDGTFVVDRQTGDVYL ACELDFERSPRYMLQIEVDDFSTTLPRSHFVTLEIDVQDSNDHSPQFPEDPVTIVVPENI EPGSSIYTFQAVDKDGSGPNSELSYSVIQQWPSISGLLLLDPSTGVLTLGQTLDHENISS LLLVVQATDSAVDMSQRRHGKVTARIFVTDVNDNAPVFTSPTVVSAMEDQPVGFVLLYIM AQDPDQGENGHVSYHIQDGNAEGKFSINPNTGSLSILKPVNREEQAQFNLTVVAEDHGVP RLSSTQHLTVQVIDVNDEMPVFEESVYEAFITENQPAGATVLVVSASDSDQGSNGIVTYG GLRDDVFTIHPVTGVISTTRSLDRESKEDYTVTVYAKDGGFPSNFAKATVRITVLDENDN RPAFGRVYYSLEVPENQEPVTLFTLRATDLDSGDSGLVQYKITDGDHSGDFHLDKKSGVL STSRALDREKKPRYTLTVEARDLGTPSLSSTATLDISILDLNDNSPVFASSSYMVEIDED APEGTFVLEVTAIDKDEGSNGQVVYFLSQESRGMFIVDQHSGRIVTAARLDREKVASYSF QVFAIDSSAGNPRNSSAQVTIHILDVNDNAPFFITDPLIINVSSSSFSSHRVLATMRAED KDFGANGSVFYRFANPVKGFTINSLTGDIQATERLHGLTQSQRTLIVQAMDQGSPPQSSL GVVMVYIREQSYNGIRFSRNSKDVSLQENAAKGTAVVQIQAQYPDGSRSGITYSIFSGNK LQSFSISSTTGEIWVESSRGLDFEETPRLRLVIKAETASSSSFMAVNLILQDVNDNLPRF QLHNYVAYVREAQGYDFPIIQVLADDLDQGQNGQVTYSIRSSSMSSLFKIDPLTGSISTA AIMDREIWTQTKLVITATDKGSPRLAGSATLTVIIVDQNDNRPTIPVPREVRVPENTLIG TVITQVTGNDVDSGPALSYTLHLDKDSQGKFGIHRYGGGVSLTGQLDYEEKTWYTVTVRT SDSMHQSEANLTILVEDVNDNAPIFTQDLYQVTLAENSPAGSSVITVTATDQDSGENGKV TYRVVSTRDLFYIDPSNGTLFIKKKTEFDSERPSFLVVIEACDGGNPSLTGLTTVQVHVS DVNDNAPVFHQTEYRAAVSEDEPPGSTILTLEAVDGDLSRDNCGFDFAIASGNTGNTFQV ESSIRFLEGRGFQIVGTLVLAERLDFEAVNTYNLTIVASDRGIPQRSSSVPVVITVMDTN DNPPAFSRAEYNVVLSEGAETGTDILQLSALDPDSTPNGEVQYSIISGDESELFSLDQWT GALRLRRSLDNEQESSHILIVQASDGEGHFALVPVTIEIKDINDNRPFFPLKTLTASIRE NQPQNTLVTILHAIDHDAGAFGKLKYYIMDKSGNGRESFMVNQTSGEIRTRFSFDFEKMN TFHFVAVAMDAGNYSATATVQVYVTGEDEYEPVFTSSNIAFHVPEGAKKGQSIGQVVAKD EDGGVDGIVLYRLAETSPYFEVNISTGVISLKMDAYGRHVGRSKRETRQVTLDVIAHSPL ESSRVATAQIVIDVTHTSFGLTTDMNILLASVIAASLAAIVVLIIIAAVLYLLRSRRKKY QETRARMLTSGTVLDTLDEPKVHGSEKLYHQALPGYAGDQNAGGGGPYTRGGSLDPSHSS GRGSAEAEAAEDDEIRMINEYPRVSSISSSMQEHIAARGPDSGIQQDSDQLSDISGEPGM DINQWLKGKKMGSLSGSLLSGQTAVYRDDGGGYLGVGRGLSISQSKDYTFPEDGKPIVDG SLTAIVASDEELRGSYNWDYLLNWCPQFQPLANVFTEIARLKDENAPVNPRRPFQPKAKT DPKPRIDPPPLITSVAHPGAKTVLPKPAVGRTLPHVSTLKRSPISHDGSVSSIAMSPSFS PSLSPLAARSPAISPFGVTHGPSASIISTNEHSVEHSEETELRI NT seq 9855 nt NT seq  +upstreamnt  +downstreamnt atgaagaaagtgctaaccggagttggaagcacagtaatggaccaaatccatcaacatagg acatgggatagcaggctgctcgtgctcctctgtgtggctcttcaattcttcacggctcac tcctctatggtacctggtacactggagctccagctagatgaagagcaaccagcgggtact gtagttggagacattagtgctggcctgcccccaggtgttacagcgtctctttacttcatc tcagatcatgagggaacaggtgttgggaccgacctggacattgacgaaagcacgggcatc ataaggacagcaaaggtcttggaccgggaaatacgagaccactacaatttcatagcggtt accatgacagctgagacagtggaggtgaccattttagtgaatgacatcaacgaccatgct ccagtattccccagaaaacgggcctcttttaaaatcccggaacagaccaccataggtact aaattccccctggaacctgccttggatgcagacaaggaccagctaacgactcaaggttac attataacagatggaaatgtgggccaggcgtttcttcttgaaacaagaagaggctccaat caagtactttatctggatttggtagtcaatgccattttagacagggagaaacggtcatcc tatactctcgtcttggaggcctttgatggcggatctcctaagaagactggccagatggtc ctggacgtgaccgtgcaggacatcaatgacaatgccccggtgtttaaccagagcaggtat catgccatgatctctgaaaacctgcagccaggcaacaacatactgcaagtgtttgcttcg gatgctgacgagggtgacaatggcctggtgctttatgagattaacaggagacagagtgac cccgatcgctactttgtcattaactcccagactgggataataactctgaataaacctttg gactatgagatgaggaaggttcatgagctggtcgttcaggcaagggacaatgctacacaa tctgaggtcaccaatgcctttgtgaccatacatgtgcgggactataatgacaaccagccc accatgaccatcatcttccttagcgaagatggctcaccacgcatatctgaaggtgcacaa cctggccagtatgtagcacggatctctgtcacagaccccgattatggggagtactccaat gtcaatgtgtctttagagggtggagatggaaaatttgctctcaccactaaagataatatc atctacctcatatgtgtagatgagatcctcgatcgtgaagaacgggaccgctatgaactg agggtcatggccacagactctggaacccctcctttacgagccgagtcttcatttaccatc caggttacagatgtcaatgacaacccacctttatttgtccaacaagaatacacccaggta atcccagaagtaatctttccagggagctttgtgctacaggtcacagcacgagacaaagac cagggccctaatggagatgtacagtatagtatcctgcagaatcttgagactcattccgac tggttcagcattgatgccatcaccggcatcatcactacgctcactcagctggattatgag acagaccctactcctagtttgatcgttgtggctatggacaggggtagacctcctctgtcc tccactgctgtagtcaaagtcatccttcaggatattaatgacaacgaacctgtttttgga agcaagttctacaacgcatcccttaaggagaacactgcagcagggacatgcttcttggag gtgaaagcgagggatgccgatggtggctcgtttggctccgtgtcctattcgctgggatct ggacctggtagcttggcccatcctcacttcaccatcaaaaaagaaagtgggcaaatctgc accagtgcaagtctggaccgtgaccagggccctgccagctatgacttcactgtcacagcc gtggacgggggtggcctgagctctgttgcctacgtgcatgttgacctggtggacgttaac gacaactggccaaccttctaccctgtgcactatgctgtaagtctgagcactcagagcagt cctggcacctctgtcatccgggtgacggcccatgaccccgacgcaggagagaacggcagg gtgatgtaccgtaccgcacctgggggaagttcgcccttcttcacgctgaataaagacacc ggagtgatatcattatcacgctctctgcatgggaaggcaaacacagtcatcgccatggtg gtctcggcccaagatgggggtggcctcacggctccagtaaacgccaaggtcaacatcagc atcgtggctggtctggtggcacctcctgtgtttgaacaggctcagtattacttcactgta tctgaagatgccctgcgtgggacccaagtcggcactgtacgtgccagcaccaagaatggg gtctcaaaggacgtttcctacaccatctgctctggtgaccctactggttatttcacagtg gatcctgagacgggaattttgagaacgagtctacctctggaccatgaactccagcccatt gtggaactggaggtccaggcacaaagcgggaacccgccagcttttggtcaaacccgtgtc catatcacagtggtggatgtcaatgacaacgctcccaccttcatcccatcgtcttctgaa tctctgattcttcttgatgatacaaggatgggcactgtggtctataagattcaggctgag gaccttgactctggtcctaacggtgctttgaccttcgacctactccccagtggtgcccag agaaccttcaatgtggaccgtagcagtggagaaatccgtctgattgcaagtttgtcgtat gagacagtgccacgctatgatttgcaggttcttgccaaggacatgggagcaccccagctc agtgccatgttcaccctggtggtgcatgtgcaggctgagaacggccaagggccggtgttt gacaccctcagctaccgagtggagctgaaggagggcacgccgctcaacacccgtttcctg caggtgcgtgcactcaatagagatggcgggatcacttccggatccggcgctacggtccct ctggcttaccacctgcaaccggatggagacgcagcaggctttggcattgtctcggacagt ggctggctgtttgtaaagagcgccctggaccgcgaggttaaagaggtgtaccttctcaca gtcctcgccacatccggtcacgggcagctgaaaaagacaggtagtgccacggtacgcatt tcagtgatggatgaaaatgacaactcgcctcgctttacccaggagagagctttcctggct gtaagagagaacctgccagctgggtcaggcttcggccgggtgcctgctacagatcgggat gccggactcaacagccgcctcatctaccgactcctgcacccggatcgccattttcagatc aactcccacacaggtgagataagcactagggtagcactggatcgagagcaccagtccagc taccagttggtggtggtggtacaggatagtggaactccccctcgcagtgccactgggacg gccttcatcacggtgctggatgaaaatgacaacgctcccttctttacccgtagagatctt ctcatgcaggtcttggaaggacagccatcgggggttttactgggtaccgtcactgccaaa gacccagatgagggagaaaatgggaccgttttctactcactatcaggtctcagggccgaa cgcttctctctgcaccccatcaccggagagctgcactcgtcctcccctcttagtcatgct gagaggcctgaatataccttcagtgtcatggccacagaccgtggctcacctccgcgcagc tccacagctactctgagaatacaggttctcagctctaataaggggacctctacctcaaac ctggtctccatttcgtttaacccagtggaaggagcgaagccaggctcagtcataggttct gtgcgaactcctgacactcagtcgctccctgaatcgggccaggtcacctacacggtagtg ggtggcacagatcgggacggaacctttgtagtagaccgtcaaaccggggacgtgtatctg gcctgtgagctggactttgagcgttcacctcgctacatgcttcagatcgaagtggacgat ttctccaccacgcttcccaggagccattttgtcactttggagattgatgtgcaggacagt aacgatcattcaccccagttccctgaagatcctgtcaccattgtggtgcctgaaaacatt gagcctggatcttctatctacactttccaggctgttgacaaggacgggagcggcccaaac agtgaactgagctattctgttattcagcagtggcccagcatctcaggtcttctgctgctg gaccccagcactggagttctgaccttgggtcagactctggatcatgagaacatctcttct cttcttctggtagtccaagccactgattcagccgttgatatgagtcagcgacgtcatggg aaggtcacagcccggatctttgttacggatgtcaacgacaacgcccctgtgtttacctca ccaactgtggtcagcgccatggaggaccagcccgtgggattcgtcctgctgtacattatg gctcaggacccggatcagggtgagaacggtcacgtgtcctaccatatccaggatggaaat gctgagggcaagttcagcatcaaccccaatactgggtcgctgtctatcctgaagcccgtt aaccgtgaggagcaggcccagtttaatctgaccgtagtagccgaggatcacggcgtcccc cgactgtccagtactcagcatctgacggtgcaggtgatcgacgtgaatgacgaaatgccc gtttttgaagagagtgtatatgaggccttcatcactgagaaccagccagcaggagccacc gtgttggttgtctcggcttcggattcggaccaagggagcaatggtatcgtgacgtacgga ggacttagagatgatgttttcaccatccacccagtgacaggtgttatatcaaccaccagg tccctggacagggaaagcaaagaggactacactgtgacagtttatgccaaagacggcggt tttccgtctaactttgccaaggccacagtgcgtatcacagtgctggatgagaatgacaac aggcccgcttttggcagagtgtattacagtcttgaagtgccagaaaaccaggagccggtg actctgttcactctgagagcaaccgacctggactcaggagacagtgggctcgtgcagtat aaaatcacagatggggaccattcaggcgactttcacttggacaagaaatctggtgtactg tccacctccagggctttggacagagagaagaaaccccgctacaccctcactgtggaggct cgagacctgggcactccttccctgagtagcaccgccactctggacatcagcatcctggac ctcaatgacaatagtcctgttttcgccagcagcagctacatggtggagattgacgaggat gccccagaaggcacgtttgttcttgaggtgactgccatcgacaaggacgaaggctccaat ggccaagtggtctacttcctgagccaagagtccaggggtatgttcatcgtggaccaacac agtggtcgcatcgtcacagctgcaagactcgacagggagaaggttgcatcctacagcttc caggtgtttgctatagattcctctgctggcaatcctcgcaattcttcagctcaagtgact attcacatcctcgacgtgaacgacaatgcacccttcttcatcacagatcccctcatcatt aatgtgtccagcagcagcttcagcagtcatcgcgtgctagccaccatgagagctgaggac aaggacttcggggctaatggttctgtcttctatcgttttgccaaccctgttaaaggcttc accataaactcattgacgggggacattcaggccactgaaaggcttcatggcctcacccaa agccagaggacactcatagtccaggccatggaccaagggagccctccacagtcctcactg ggagtggtcatggtctacatccgtgaacagagttacaatggaatccgtttcagccgcaat tccaaggatgtcagcctacaagaaaatgcagccaaaggtactgctgtggtacagattcag gcccagtatcccgatggctcccgaagtggcattacctatagtatcttcagcggcaacaag ctacagtccttcagcatcagctccactacaggtgagatatgggtggagagctccagaggg ctggattttgaggagacccctcgacttcgcttagtgatcaaagctgaaactgcatcctcc agctccttcatggcagttaacctcatcctgcaggatgtcaacgacaacctgccacgcttc cagctccacaattatgttgcttatgttagggaggcccaggggtatgatttccccatcatt caggttctggcagacgaccttgatcaaggtcagaacggacaggtgacctactccatcagg tcatcgtccatgagcagcctgttcaagattgaccctctcacaggaagcatctcaacagcc gccatcatggacagagaaatctggacacagactaagctggtcatcacggccactgacaag ggcagccctcgattagcaggttctgccactctcactgttatcatagtggatcagaacgac aaccggcccactatcccggttcctcgagaagtgcgagttcctgagaacacactgattggg acagtgatcacccaagtgacggggaatgatgtggattctggtcctgctctctcttatacg ttgcacctggacaaggactcccaggggaagtttgggatacatcgctatggaggaggggtc tccttaaccggccagctggactatgaagagaagacgtggtatactgtgaccgtccgaaca tctgactccatgcaccagagtgaggccaatttgacaatactggtggaagatgtgaatgat aatgcccccatcttcacacaggacctttaccaggtgacacttgctgagaattctccagct ggtagctcggttattactgtgactgctactgaccaagattcaggagagaatggcaaggtc acatatagagttgtgtcaacgagagacctattctacattgacccaagtaatggcacactc ttcatcaaaaagaaaactgagtttgattctgagcgtccatccttcctggtggtaattgaa gcttgtgatggtggtaatccgtcactgactggtcttaccacagtgcaagtccatgtgtcg gatgtcaatgataatgccccggtgttccaccaaaccgagtacagagctgctgtatcggag gacgagccccctggatccaccatcctcacgctggaggctgtggatggagacttgtctagg gacaactgtggatttgacttcgccatcgccagtggaaacactggcaacacatttcaagtt gaaagtagcatacgcttccttgagggccgtggatttcagatagttggaactctagtctta gctgagaggcttgattttgaagctgtgaatacctataatctcactattgttgcttcagac cgtggcattccccagcgaagctcaagtgtccctgttgtaatcacagtaatggatacgaat gacaacccaccagccttcagcagggcagagtacaacgttgtcctgagtgaaggtgctgag actggaacagacatacttcagttatctgctttagacccagactccacccctaatggagag gtgcagtactcgatcatctctggagatgaaagtgagctcttctcgttagaccagtggact ggcgctctccgtttgcggaggtctttagacaatgagcaagaatcatctcacatacttatt gtgcaagcctcagatggagagggccactttgctcttgttcctgttaccatagagatcaag gacatcaatgacaatcgacctttctttcctcttaaaacgctgacagcaagtattcgagag aatcagcctcaaaacacccttgttaccatcctgcatgctattgatcatgatgcaggggca tttggcaagctgaaatattacataatggataaatcaggaaatggaagagagtcgtttatg gttaatcagacctctggtgagattcgaacccgcttcagttttgattttgagaagatgaac acatttcactttgttgctgtggcaatggatgcaggaaactattctgcaactgctacagtt caggtgtatgtgactggagaagatgagtatgaacctgtttttaccagttcaaacattgcc ttccatgtccccgaaggagcaaagaaggggcagagcattggccaagtggttgccaaagat gaggacgggggtgtagatggcattgtcctgtacagattagctgagacctctccctacttt gaggtcaacatctctacaggagtgatttccctcaagatggatgcatatggccggcatgtc ggccgatctaaaagggagacacggcaagtgactctagatgtgatagcgcatagcccattg gagagttcccgtgtagccactgcacagattgtcattgatgtcactcacacatcctttggt ttaactacagacatgaacattctgctagctagtgtcattgctgcatccttggcagctata gtggtcttgataataattgctgcggtgctctaccttctgcgatctcgaaggaagaagtat caagagactcgagctagaatgttgacctctggtacagttttagatactcttgatgaaccc aaagttcatggaagtgaaaaactttatcaccaagctctacccggatatgctggagaccag aatgcaggcggaggaggaccatacactcgaggagggtcgctggatccttctcactctagt ggaagaggctcggctgaggcagaagcggcagaggatgacgagatccgtatgatcaatgag tatccacgagtttctagtatttcatcttccatgcaggagcatatagctgcccgtggacct gattctgggatccagcaagattctgatcagctctcagacatctctggtgaacctggaatg gacataaaccagtggcttaaagggaaaaagatgggaagcctaagtggaagtctcttgtcg ggccagacagcagtgtatcgtgatgacggtgggggataccttggggtaggaagagggctt agcatttctcagtctaaagactatacattcccagaggatgggaaacccatagtggatggt tctctcacagcaatagttgctagtgatgaggaactgagaggcagctacaactgggactac cttcttaactggtgccctcagttccaaccgctagctaatgtatttacagaaatcgctcgg ttaaaggatgagaatgccccagttaacccacgccgaccctttcagcccaaagcaaaaaca gaccccaagcctcgaattgacccccctcctcttatcacatcagtagctcatcctggggct aaaactgtccttccaaaacctgctgttggacgaactcttccccacgtgtccaccttaaaa cgatcgccgatcagccatgatggttcggtctcttcaatagccatgtcacccagtttctca ccgtccctatccccacttgcagcccgttctccagccatctcaccatttggcgttacccac ggcccatctgcctccattattagtacaaatgaacactctgtagagcacagcgaggagacc gagcttaggatttaa

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