Ictalurus punctatus (channel catfish): 108278286
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Entry
108278286 CDS
T04658
Symbol
zgc:114130
Name
(RefSeq) mRNA decay activator protein ZFP36L1 isoform X1
KO
K18753
butyrate response factor
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04218
Cellular senescence
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
108278286 (zgc:114130)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108278286 (zgc:114130)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
108278286 (zgc:114130)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_2
zf-CCCH_4
Torus
zf-CCCH_UNK-like_4th
zf-CCCH_9
Zn_finger_prot
Motif
Other DBs
NCBI-GeneID:
108278286
NCBI-ProteinID:
XP_017347031
Ensembl:
ENSIPUG00000018256
UniProt:
A0A2D0SXH8
LinkDB
All DBs
Position
17:4360168..4370166
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AA seq
351 aa
AA seq
DB search
MPSFAFNQFIDRDDLLCKQLLNLDMGELPKTSAPPTSAVGYPKPGSITSNSWAQTKELPL
PSRWNKMGFWSERAVSMVEGETGGLGWACDKPGSVSSAASFAGSTSCVSSSTASSRYKTE
LCRTFTERGTCKYGSKCQFAHGAEELRGINRHPKYKTEPCRTFHSIGFCPYGIRCHFVHN
NDDDAHLRPRQPSLPTTTQRPPLLKQSFSFAGFPSNPLPLDRPFSQSSFLGMPSASPPSS
GTVSDLLAMAFPEFLPSHDSGCSSGEPTPTTSPSQMAPGVPDQSFSVSLGTRSLSLTSLS
DHEGRCSSSASSLSGSDSSSANDSAAKRLPIFSQLSVPDGFYSEGSSSFFL
NT seq
1056 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcattcgccttcaatcagtttatcgatagagatgatcttttgtgcaagcaactt
ttaaatctagacatgggcgagctgccaaagacttctgcacctcctacatcagcggtggga
tatccaaagcccggatccataacttctaacagctgggcacaaaccaaagaactccctctg
ccgtcacgatggaacaagatgggtttctggtccgagcgtgccgtcagtatggtggagggc
gagacgggaggtctgggctgggcatgtgacaaacccgggtccgtgtcgagcgctgcgtct
ttcgccggctccacgtcgtgtgtgtcttccagcaccgcttcttcacgctataagactgaa
ctgtgtcgcacgttcacagaaagaggcacgtgcaaatacgggagcaagtgccagttcgcc
cacggagccgaggagctacgcggcatcaaccgccaccctaaatacaagaccgaaccgtgt
cgcacgttccattccatcggtttctgtccgtacggcatccgctgccacttcgttcacaac
aacgatgacgacgcacacctccgccctcgccagccctctcttcctacaactacccagcgt
ccacctctcctaaaacagagcttcagcttcgccggctttccttccaaccccttacctctg
gatcgtcccttttctcagtcgtcgttcctcggcatgccgtctgcctcgccgccttcctcg
ggcaccgtctctgacctcctggccatggcgttcccagagttcctgccctcgcatgactct
ggctgctccagcggtgagccgactcccaccacctcgccctctcagatggcgcctggtgta
cctgaccaaagtttcagcgtctcactgggcacgcggagtctgtcgctcacgtcgctctcg
gaccacgagggacgttgtagcagctccgccagtagcctgagtggctccgattcgtcttcg
gctaacgacagcgccgccaagaggctgcccatcttcagtcagctgtctgtgcctgatggt
ttctacagtgaaggcagttcaagtttcttcctttag
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