Ictalurus punctatus (channel catfish): 108278342
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Entry
108278342 CDS
T04658
Name
(RefSeq) breast cancer type 2 susceptibility protein
KO
K08775
breast cancer 2 susceptibility protein
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03440
Homologous recombination
ipu03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108278342
03460 Fanconi anemia pathway
108278342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108278342
03036 Chromosome and associated proteins [BR:
ipu03036
]
108278342
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108278342
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
108278342
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
108278342
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
108278342
FA (Fanconi anemia) pathway
Downstream FA components
108278342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_helical
BRCA2
BRCA-2_OB3
BRCA-2_OB1
BRCA2DBD_OB2
Tower
BRCA2_TR2
Motif
Other DBs
NCBI-GeneID:
108278342
NCBI-ProteinID:
XP_017347140
Ensembl:
ENSIPUG00000013129
UniProt:
A0A2D0SXT8
LinkDB
All DBs
Position
17:complement(24141871..24161304)
Genome browser
AA seq
2630 aa
AA seq
DB search
MFDGFFHQIETELGPLNSGWFEELTVRASENGRDDSTVVEHDASAHKDNAVFSAPAKTPV
SDSQMCSTPRIFRCRRPHSAASGLEESPDTASTSIPGLQNLFPVPPGAESSPCLFGLAKD
SQRFEKDWGSLKTGASLDLLDTPTGLTTQASSAQRICESLGAQLNPDLSWSSSFNTPSAL
TPTVILSKTEGQSSPGSFLRDKEVIIVRKLFPSLSKGTESTSACTSNAQHNDTLTDGNVQ
AEEQKSDSSSDDIEGIWKQTVPDAIKDDNVRNTVERVLNGAEDVLSFLFTNSSSALRRVK
TMERKKRVNGVSKDVKSNPLTLDCATGCVSASKPDTGTAVASLKSPLFSNQLNNNNNNKD
FTQWTPLSLSDVPDSKCISELSSKHTSPHVDSLVESERTEQPGQSSSRPSERQRFSPDSC
HEKSQGRSCLSDSSPGLTFSRKPRKFVYRVQHSESKRTPSVTGTSFLERDRPASLNMDHD
LDTTQLCQAFAEDFSQEANLLNSPPRSAQSSHDGVLTPACATIEMSEVRRETESVVRCEG
LAEHQEAEMIRLTNTQSVESTNRDSGYPTVCSGFSLETPSRSDTEHIHSGFKTANNKIIA
IPLEAVMKAKAALDESVEHTTCTGASSVTEAMKAGTKQYKSYKPFTADAALEKSLSEHYH
RGYGEAGRETSDGSVLRSEAAAENVPSTFMCQTNESGFNTASNKSVTVSCANLEKAKDVL
TESEEETFDPCPSSNEPQVCDVKDARPSKPSRRSTGDGHGGSSLTASQRADVTELCIMLE
ETGSQDEFTQFKPTKIGSKCPDSMPFEREWDPELLAGIDFDDSFNCDLTVKQVSNKHQPK
DVRQTSDTPASVPNSLTNGDVAVQSINARKSCRVPWEMPNMADESLQEKSFCSGFKTAKG
NAVTVSEKCLSKARSLFADIESTEGHFGLQSDKADLVKQKQRQSSDHQDIAMESVLELKP
RSNLCNGNASSITKDAETCEENLEAQGTVVEKPDLMGNFGFTTAAGKEVKVSEKALQNAK
KLLNELANDKETKHDNSPAKTTATTWTSVQNSSNVLEDVLHDPKTSDGSLPKGGKEHPFE
NSPEIKQATSPPSPRSVDGNGFKTASDKGASVSASAIQKSKPIFKDLDDSPRSPDETKST
EENTKPDVGGDAGQHALVGGFKMASGKGVSFSEKAFMKAKTFFQNRDPDRMDISQVKGDD
TSVMDDCGFEAVAGNAVRLPGIDSLNKETLKKDSTDLNKYVQRKFTKTSTETLQAPSGCG
FSTASGAVVSVSAEALQRVKAMFDYSNAASPGERRLEISEEKNTSRNETGKTCGFTTASG
RKVAISEKALQKAQSLFTDCDVDGLGPDPCNSSAAKTSAASPERIRLPFNAASKKHIAVS
ERELNESKDESVSCDDVSVESPLTVQTRQRESRNREALSDTTESVPANAGKSAGRYEDTM
NGGPKADRLGSGTCGFSTAGGKGVSVSESALAAAFEMFRDCDAQSVPNGQCRVTSGGPFA
NIDKTAAVPNTKATSPSLPSQATRDNPSLLSRHSLNLDGCTVTQRKYFEQEAMACTKALL
EDELNEDGLSSSSDTGIRQRPAVLQEGCLEVNAGIRKRTSDDKSLTGQPPLKRRLVSEFD
RISEDRTACAPVKSSPNGTLRDRRVSKYNFKPNITYPSRNVVDQTSSDLDHQKRRPSDSK
APVFMPPFRKNLQVEMPKNCLPTAVAQVPSAFVPPIKKKDASGSVCVKVKDSPQISGDSA
AVTSSSCEIGRNHSGGKAEDGKAAAETEREGMLENHTTDPCETKVIWQHSLELAQDVQNM
RIRKKTRQRVRPLPGTFYLAKTSGVSRVSLKEAVGYKCPELHTVEQLYQHGVSFKVSQTT
SENAESFRFSCDEFFKREALEETGGVQLADGGWLIPDHRGMLGKEEFYRALCDTPGVDPK
LISEAWVYNHYRWVVWKQASMERAFPEVMGGRCLTPEQVLLQLKLRYDVEVDHSRRSALK
KITERDDTPAKTIVLCVCGIAKREHSPVRSEEAADPARPKPESPAAVVWLTDGWYSIKAL
LDAPLSAMLRKGRLRVGVKLLIHGAELIGSQDACPPLEAPDSLMLKISANSTRRARWDTK
LGFHKDPRPFPLLLSSLYANGGVVSCVDIIVLRIYPAQWMEKKPGPVFVFRNERAEDREA
ARYSSTKQKTMEFLFSKIQAQIEKEEEEKKKTWRCRSFTLHEIKNLQEGEELHEAMESDP
AFVEPHLSSEQVRAVSSYRRALTERKRAELQDRVHKAAQEAEGGCANRDVTPVWKLSIAD
SNDLYSSCVYTLNIWRPSAELRSVLREGCRYKAYHLATSETKKHSGTSNIQFTATKKTQF
KDIEVCPEWLSLHFPARQSAKFRDLQSPGFSSPCGEVDIVGYVISILDRQGTSPVLYFVD
EKFDFVSVRLCGSLALLALEDLVKPLALLTVSNLQLRQQSGPLPSLYAGEQALFSTNPKE
AHLQEASSRLKTFSEDYEHFFIVAEEKLSNLIPEGFSNSRESQRTPGLPSGPKPSVRNNV
TPLQTSRVFSPFTPVTKRTPVATGNSDTKDPKSVKRKRGMEYLSRLQNPAPTLVPLGMVR
SPRVSKTFNPPRRCETPRNPQTVLTPPAQNKQWVNDEELAMINTQTLLKR
NT seq
7893 nt
NT seq
+upstream
nt +downstream
nt
atgtttgacggcttcttccatcaaatcgaaacagagctcgggcctctaaactcgggctgg
tttgaggagttgactgtgagagcctctgaaaacggacgcgatgactccaccgtcgttgaa
cacgacgcctcggcacataaggacaacgccgttttcagcgctccggctaagacgccggtc
tcggacagtcagatgtgttcaacacccagaatatttaggtgtagaagaccacattctgct
gcgtcaggtctcgaagaatctcccgatacagcctcaacctcaatcccagggctgcagaac
ttgtttcctgttccacccggtgcggagtcgagcccgtgtctgttcggcttagctaaagac
agccagcggtttgagaaagactggggatcactaaagactggcgcatccttggatctactt
gacacaccgacgggattaacaacacaagcgtcgtccgcacagcgcatctgcgagagcctc
ggggctcagttaaatcccgatctatcttggagcagttcctttaacacaccatcagcgttg
acccccacggttattttgtccaaaacggaaggccagtcttcaccaggaagtttcctcagg
gacaaagaagtcattattgtacgaaagctgtttccatcactctcaaaaggcacggaatca
acatccgcgtgtacatccaatgcacaacacaacgacacactaacggatgggaatgtccag
gcagaagagcaaaaatctgattcatcctctgacgatatagaaggcatttggaagcagacg
gtaccggacgcgataaaggacgacaacgtgcggaacacagtggagagggtgcttaacggc
gccgaggacgtgctgtccttcttgttcacgaacagcagctcagccctgcgaagggttaaa
accatggaaagaaaaaagagagtgaacggcgtctctaaggacgtaaagtcaaatcctctg
acgctagattgcgctacaggttgtgtatcggcatcgaagccagacaccggcactgctgtc
gcaagtttaaagtcccctctattttcaaatcagcttaataataataataataataaggat
ttcacacagtggacgcctctgagtttatccgacgtcccggactctaagtgtatctctgaa
ctatcaagtaaacacacgagtcctcatgtagactccttagtcgaaagcgagcgtaccgag
cagcccggacagtcctcctcacgcccttccgagcgacagaggttctctcccgattcgtgc
cacgagaagtctcaagggcgaagttgtttatcggactcgtctccaggacttaccttctca
agaaaacccaggaagttcgtgtatcgagtgcaacattcggaaagtaagagaacgcccagc
gtgactggtacgagttttctcgagcgggatcgtcctgcgagtcttaacatggatcatgac
cttgatacgacccagctttgccaagcgttcgcagaggatttcagtcaggaagcgaacttg
ttaaactcaccacccagaagtgcacagagcagccacgacggtgtcttaacgccggcttgc
gcaacgatagaaatgagcgaagtgcggcgtgaaacagaatctgtggtacgttgtgaaggc
ctcgccgagcaccaggaagcagaaatgatccgtttaacaaacacgcagtctgtcgagagc
acgaaccgtgacagtggctatccgacagtttgttctggttttagcctggaaactccatca
cgtagcgacactgaacatattcattccggttttaaaacggcaaataataagattatcgca
atacctcttgaagctgtaatgaaagctaaagcagcattagacgaatccgtagagcatacg
acatgcacgggcgcttcaagtgtaaccgaagcaatgaaagcaggtacaaaacagtacaaa
tcttacaaaccttttacagcagacgctgccctagagaaatcgctttcggaacactatcac
cgtggatacggtgaagccggaagagagacctccgacggaagcgtcttaaggtccgaggca
gccgcagagaatgttcctagcacgttcatgtgccaaacaaacgaatctggcttcaacacg
gcatctaacaaaagtgtcacagtctcatgtgcgaacctcgagaaagccaaagacgtgctc
acggagtcggaggaagagacgttcgatccgtgtccgtcgagtaacgagccgcaggtctgc
gatgtaaaagatgccaggccgtctaaaccttcacgacgttccactggtgacggccacggc
ggttcgtctttgaccgcttcgcaaagagcggatgtgacggagctgtgcatcatgttggaa
gagaccggcagccaggacgagtttacacagtttaaacccacaaagattggctcaaagtgt
ccagatagcatgccgtttgagagagagtgggaccctgagctactcgctggtattgacttt
gatgatagttttaactgcgatttaactgtaaagcaggtgtcgaacaaacatcagcccaag
gacgtgcgtcagacatcagacacgcctgcttcggtcccaaacagtctgacgaacggagac
gtggctgttcaaagtataaacgctaggaagtcatgccgtgttccatgggaaatgccaaat
atggccgatgagagtctgcaagaaaagtctttttgttctggctttaaaactgcaaaggga
aatgctgtgaccgtctcggagaaatgtctgagcaaggcaagaagcctttttgcagatata
gagtccaccgaaggacactttggtctccagagtgacaaagcagatctggttaaacaaaag
caaagacagtcaagtgaccaccaggacattgccatggaatctgtgcttgaactaaagcca
aggtcaaatctgtgtaacggaaacgcaagctcgataacgaaagacgctgaaacgtgcgaa
gaaaatctggaagcacaaggaactgtagtagagaaaccagatttaatgggcaactttgga
tttactactgctgcaggaaaggaagtaaaggtctcagaaaaagctcttcaaaatgcaaag
aaactcctaaacgaacttgcaaatgacaaagaaaccaagcacgataattcccccgcaaaa
accacagccaccacttggacttcagtccaaaattcttctaacgtgttggaagatgtactt
catgatccaaagacgtccgatggatctttaccaaaaggtgggaaagaacacccttttgaa
aacagccctgagataaaacaggcaacgagtcctccgagtcctcggtccgtggacggtaac
gggtttaaaacggccagcgacaaaggagcgtctgtctcggcgagcgcgattcagaaatca
aaacccattttcaaagatctcgatgacagcccgagaagcccggatgaaaccaagtcaacg
gaagagaatacaaaaccggatgtcggaggagatgcaggccagcacgcgttagttggcgga
ttcaagatggcaagtggtaaaggagtgagcttttctgaaaaagcatttatgaaagccaag
acgttctttcaaaatcgtgatcctgatcgcatggatatttctcaagtaaaaggagacgac
acaagtgtgatggatgactgtggcttcgaggcggttgcgggaaacgcggtgcgcttgcca
ggaatagacagtctgaacaaagagacgttaaagaaagactccacagatttgaataaatat
gtccaaaggaaattcactaaaacctccacggagactcttcaagcaccatctggctgtggt
ttcagtacagcaagtggtgctgtggtgtccgtttcagccgaagcacttcagagagttaaa
gctatgttcgattattcaaatgctgcttcacctggtgaaaggagattggaaatatcagaa
gagaagaatacttccagaaacgagacgggaaaaacctgcggctttactactgcgagtgga
aggaaagttgccatttctgagaaagccctccagaaagcacagagtctttttactgactgt
gacgtggatggattaggacctgatccctgtaattcatcagctgcaaagacatcagcggca
agtcctgagcgtataagattacctttcaacgccgccagtaagaagcacattgcagtgtca
gaaagggagctgaatgaaagtaaagacgagtctgttagttgtgacgacgtttcagttgag
agcccgttaaccgtacaaaccaggcaacgtgaaagccgtaatcgcgaagctttaagtgat
acgacggaaagcgttccagctaacgctggaaaatctgcagggagatacgaggacacgatg
aacggaggcccaaaggctgatcgcttaggatcaggaacttgcggttttagcacagctggc
ggaaaaggcgttagcgtgtcggaatcggccctcgcggcagcttttgagatgtttagagat
tgcgatgcacaatcagttcctaacggacagtgcagagttaccagtgggggtccgtttgca
aatattgacaaaacagcagctgtgccaaacaccaaagccaccagtccatctctcccgtca
caggccacacgggataatccttccctgctgagccgccattctttaaatcttgatggatgc
actgtaacccagcgaaaatatttcgagcaagaagcgatggcttgcactaaagcactttta
gaggatgagctcaacgaggacggtttgtcgagtagctcggacactgggattaggcaaagg
cctgccgtgcttcaggagggatgcttggaggtgaacgcaggaatacgaaaacggacctca
gacgacaagagtttgacaggtcaaccccctttgaagagaagacttgtgtcagagttcgac
cggatctcggaagacaggacagcctgcgctccagtgaaaagcagccccaatggcacactg
agagacagaagagtctccaaatacaacttcaagcccaatatcacttatccatccaggaat
gttgtggaccaaacctcatccgacttggatcaccaaaaaaggagaccgtcagactccaag
gctccagtgtttatgcccccatttcgaaaaaatcttcaggttgagatgcctaaaaactgt
cttcctacagctgtggcccaggttcccagtgcatttgttcctcccattaaaaagaaagat
gcgtcaggtagcgtttgtgtgaaggttaaggattcaccgcagatttctggcgattccgca
gccgtcacaagctctagttgtgaaatcggcaggaatcactcgggcgggaaagcagaggac
gggaaagcagcggcggaaaccgagagagaggggatgttggagaatcacaccactgatcct
tgtgaaacaaaagttatttggcagcactccttggagttagcgcaagacgtgcagaacatg
agaatcaggaaaaagacccgccagagagttcgacctctgcctggcacgttttatctggct
aagacgtccggagtgagcagagtttccctgaaagaggctgtaggatacaagtgtcctgag
ctacacacagtagaacagctctatcagcatggtgtatccttcaaagtgtcccagacaacc
agcgagaatgccgagtcgttccgattcagctgcgatgagtttttcaaacgtgaggctctc
gaagagaccggaggggttcagctggctgatggagggtggctgattccagatcacagggga
atgctgggtaaagaggagttctacagagccttgtgtgatactcctggtgtcgaccccaaa
ctgatcagtgaagcatgggtgtataaccactatcggtgggtcgtgtggaaacaagcctcc
atggaaagggccttccctgaagtgatgggtggtcggtgtctcactccagagcaggtgctc
ctgcagctcaaactcaggtacgacgttgaggtggaccacagtcgaagatcagccctgaag
aagattacggagagagacgacaccccagccaagaccatagtgctctgtgtgtgtggaatc
gccaaacgcgagcacagtccagtcaggtcagaggaggccgccgaccccgcacgtccaaaa
cccgagtcgcctgctgcggtcgtttggcttaccgacggctggtattccattaaagcgctg
ctggatgctcctctgtctgccatgctgcgaaagggccgtctcagagtgggcgtgaaactt
ttgatccacggagcggagctgatcggctctcaggacgcctgtcctcctctagaggctcct
gattcactcatgctcaagatttcagccaacagtacaagacgagctcgctgggacaccaag
cttggcttccataaagaccctcgaccctttcctctgttgctttcatcactgtatgctaat
ggaggagtggtgagctgtgtggacatcatcgtgttgcggatttacccagcgcagtggatg
gagaagaagccaggtccggtctttgtgtttcgcaacgagcgagccgaagacagagaggct
gcacgctacagcagcaccaaacagaagaccatggagttcctcttctccaaaatacaagcc
cagattgagaaagaggaagaagaaaagaagaaaacctggagatgcagaagttttactctc
catgagattaagaacctgcaggaaggggaggagcttcatgaagcaatggagagtgatcca
gcttttgttgagccccatttaagctcagaacaggtgagagctgtgagtagctacagacga
gcgttaaccgaaaggaagagagctgagctacaggatcgggtgcacaaggctgcgcaggag
gccgaggggggctgcgctaaccgcgacgttactcccgtctggaaactctccatcgctgac
tcgaatgatttgtacagcagctgtgtatacacactgaatatctggcggccctcggcggag
ttgcgctccgtactgagagagggctgcagatacaaggcttatcatctggccacatcggag
accaagaaacactccggaacgtccaatatccagttcaccgccaccaagaaaacccagttt
aaggacattgaggtttgcccagaatggttaagtctacattttcctgcaagacaatcagcg
aaattcagagatctccagagccccggattcagctctccatgtggagaagtcgacatcgtg
ggatatgtcatctccatcttggacagacaaggtacgtctcctgtgttgtactttgtggat
gaaaagtttgactttgtctccgtgaggctctgcggcagcctggctcttctcgctctggag
gacctggtaaagccattagctctactgactgtaagcaacctgcagctccgacagcagtct
ggcccactccccagcctttatgctggagaacaagcattgttctctacaaaccctaaagaa
gcccacttacaggaagctagttctcgtctgaagacgttttctgaggattatgagcatttc
ttcatagttgctgaagagaagctctcgaacctgattccagaaggtttctcgaactctcgc
gagtcccaaagaactccaggtttaccatccgggccaaaaccaagcgtcagaaataacgta
acaccccttcagacaagccgggttttctcccctttcaccccagtgaccaaaagaacccct
gtagcaactggaaactcggacaccaaggaccccaagagtgtgaaaaggaagcgtggtatg
gaatacctgtcacgcctccaaaacccagcacccaccctcgttcctctgggaatggtccgt
tctcccagagtcagcaagacctttaaccctcccaggaggtgcgagactcctcgtaatccc
cagacagttctaactccaccagcacagaacaagcagtgggtgaacgatgaggaactggcc
atgataaacacacaaacactactaaagaggtag
DBGET
integrated database retrieval system
