Ictalurus punctatus (channel catfish): 108278429
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Entry
108278429 CDS
T04658
Name
(RefSeq) short transient receptor potential channel 1 isoform X1
KO
K04964
transient receptor potential cation channel subfamily C member 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ipu04040
]
108278429
Ion channels [BR:
ipu04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
108278429
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
TRP_2
Ion_trans
Ank_2
Ank_4
MTR4-like_stalk
LHD_TRPY1
TALPID3
Motif
Other DBs
NCBI-GeneID:
108278429
NCBI-ProteinID:
XP_017347310
Ensembl:
ENSIPUG00000001110
UniProt:
A0A2D0SYA4
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Position
1:34543865..34576357
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AA seq
799 aa
AA seq
DB search
MRLGLGVLSYPLPVLMAALYRGPHTASPRAHLALKDVREVQEETTLDEKLFLLACEKGDY
YMVKKLLEEKRHGELNINCVDVLGRDAVTIAIEHENLEILQLLLENGCQTTDALLVAIDS
EVVGAVDILLNHRPRRSSKPSIAKLMQRIQNPEYSTTMDVAPVILAAHRNNYEILTMLLK
QDISLPRPHAVGCECTLCNAKNKKDSLRHSRFRLDIYRCLASPSLIMLTEEDPILRAFEL
SADLKELSLVEVEFRTDYEELAKQCKMFAKDLLAQARNSRELEVILNHTSNEDHVNKRGL
MEERMNLSRLKLAIRYNQKEFVAQSNCQQFLNTVWFGDMASYRRKHTGLKLLMVLSVVLL
WPLLSVCYLLGPRSRVGHIIHTPFVKFIIHSASYLTFLLLLNLYSLVYNKDTKDTVGPAL
ELIDYLLILWIIGMVWSDVKRLWYEGLEDFLEESRNHLSFVMNSLYLATFALKVVAHSKF
KNGNVDRKDWDASHPILVAEGLFAFANVLSYLRLFFMYTTSSILGPLQISMGQMLQEFGK
FLGLFLLVLFSFTIGLTQLYGKDQKDPSKSKNDSKDCEGIFCEQQSNDAFHTFMGTCYAL
FWYIFSLAHVALFVTRISYTEELRSFVGALIIGTYNIVVVIVLTKLLVAMLHKSFRQIAN
HEDKEWKFARAKLWLSYFDDKCTLPPPFNILPSPKTLCYLVTSVSKWVCSHTSTGKMKRQ
NSLKEWKNLKQKRDENYQKIMCCLVHRYLTSTRQKMQSTDQATVENLNDLRQDLSKFRNE
MRDLLGFRTSKYAMFYPRS
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgcgcctcggcctcggcgtgctgtcgtatccgctccccgtactgatggctgcgctgtac
cggggcccgcacaccgcctctccccgcgcccacctggcgctcaaggacgtccgggaggtt
caggaggaaaccacgctggatgagaagctcttcttgttggcctgtgagaagggtgattac
tacatggtgaagaagctgctggaggaaaaacggcacggcgagctgaatatcaactgcgtg
gacgtgttggggagggacgccgtcaccatcgccatcgagcacgagaacctggaaatcctg
cagctgctcctggaaaacggctgccagacgacagatgctcttttggtggccatcgactcg
gaagtggtgggagctgtcgatattcttctcaaccaccggcccagacgatcctccaaaccc
tcgattgcgaaactgatgcagcggatccagaacccggaatattccaccaccatggacgtg
gcccccgtcatcctggctgctcacaggaacaactacgagatcctgaccatgcttctgaag
caggacatctcacttcccagacctcacgccgtgggctgcgagtgcactctctgcaacgcc
aagaacaagaaggacagcctgcgtcactccaggtttcggctggacatctatcgctgcctg
gcgagtccgtcgctcatcatgctgacggaggaggaccctattctcagagcgttcgagctc
agcgctgacctcaaggagctcagcctggtcgaggtggagttcaggactgattatgaagaa
ctagccaagcagtgcaagatgttcgctaaagacctgttagcccaggcgcgaaactcacgt
gagcttgaagtcatcctgaaccacacgagcaacgaggatcacgtgaataagagaggacta
atggaggagcgcatgaacctcagccgactcaaactcgccatcagatacaaccagaaagag
ttcgtggcgcagtctaactgtcagcagttcctgaacacggtgtggttcggtgacatggcg
agctaccggcgtaaacacacgggtctgaagctgctgatggtgctgagcgtggttctgctg
tggccgctgctctcggtgtgctacctgctcgggccgcgctcgcgcgtcggacacatcatc
cacacgcccttcgtgaagttcatcatccacagcgcctcttacctcaccttcctcctcctg
ctcaacctctactcactggtctacaacaaggacaccaaggacaccgtgggcccggcgctg
gagttgatcgactacctgctcatcctctggatcataggaatggtgtggtcagatgtaaag
cgtctgtggtacgagggcctggaggacttcctggaggagtcgaggaaccatctgagtttt
gtcatgaactctctgtacctggccacctttgcgcttaaagttgtggctcacagcaagttt
aagaacgggaatgttgaccggaaagactgggacgcctctcaccccatcctggtggccgag
ggacttttcgccttcgctaacgtgctgagctacctgcgtctcttcttcatgtacaccacc
agctccatcctcggccctctacagatctcgatgggtcagatgctgcaggagtttggaaag
ttcttaggtctgttcctgctggtgctcttctccttcaccatcggcctgacgcagctttac
ggaaaagaccagaaggatccgtccaagagcaaaaacgacagcaaggactgcgaaggaatc
ttctgtgaacagcagagcaatgacgcctttcacacgtttatggggacgtgttatgcactc
ttctggtacatcttctctcttgcccacgtggcgctgttcgtgaccaggatcagctacacg
gaggaactgcgctcgttcgtgggcgccctcatcatcggcacgtacaacatcgtggtcgtg
atcgttctcaccaagcttctagtggccatgctgcataagagcttcagacagatcgccaac
catgaggataaagaatggaaatttgcccgggccaagctctggctcagctactttgatgat
aaatgcacattgcctccaccgtttaacatccttccatctccgaagacgttgtgctactta
gtgaccagcgtgagcaagtgggtctgttcccatacgtccactggaaagatgaagagacag
aacagcctcaaggagtggaagaacctgaagcagaaacgggacgagaactaccagaagatc
atgtgctgcctggtgcatcgttacctgacgtccacacggcagaagatgcagagcacggac
caggcgacggtggagaacctcaacgacctgcggcaggacctgtccaagttccgcaacgag
atgagagacctgctcggctttcgcacatccaaatacgccatgttctaccctagaagctaa
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