Ictalurus punctatus (channel catfish): 108278463
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Entry
108278463 CDS
T04658
Name
(RefSeq) replication factor C subunit 2 isoform X1
KO
K10755
replication factor C subunit 2/4
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03030
DNA replication
ipu03410
Base excision repair
ipu03420
Nucleotide excision repair
ipu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108278463
03410 Base excision repair
108278463
03420 Nucleotide excision repair
108278463
03430 Mismatch repair
108278463
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ipu03032
]
108278463
03036 Chromosome and associated proteins [BR:
ipu03036
]
108278463
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108278463
DNA replication proteins [BR:
ipu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
108278463
DNA Replication Termination Factors
ELG1-RFC complex
108278463
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
108278463
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
108278463
Check point factors
HRAD17(Rad24)-RFC complex
108278463
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
AAA_lid_RFC1
AAA_22
nSTAND_NTPase5
RCF1-5-like_lid
AAA_14
AAA_16
Mg_chelatase
Viral_helicase1
Rad17
AAA_11
RuvB_N
AAA_assoc_2
AAA_19
AAA_24
nSTAND3
MipZ
AAA_18
ABC_tran
AAA_5
AAA_28
AAA_23
DNAX_ATPase_lid
AAA_25
MeaB
AAA_30
RNA_helicase
NTPase_1
FtsK_SpoIIIE
SLFN-g3_helicase
Motif
Other DBs
NCBI-GeneID:
108278463
NCBI-ProteinID:
XP_017347349
Ensembl:
ENSIPUG00000024732
UniProt:
A0A2D0SXE0
LinkDB
All DBs
Position
18:15876323..15884023
Genome browser
AA seq
357 aa
AA seq
DB search
MDVEMKEPDGEQSQTDAQNNKKEDKKEDATKSSTSTYELPWVEKYRPLKLNEIVGNEETV
SRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPAMKDAVLELNASNDRGIDVVR
NKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKI
IEPIQSRCAVLRYSKLRDEQIMMRLMEVVEKENLHTTNDGLEAIIFTAQGDMRQALNNLQ
STHSGFGFINSDNVFKVCDEPHPLLVKNMLEHCVSANIDEAYKIISQLWSLGYSPEDIIG
NIFRVCKTFQMPEYLKLEYIKEIGYTHMKVAEGVNSLLQLAGLLGRLCSKTATPEAS
NT seq
1074 nt
NT seq
+upstream
nt +downstream
nt
atggacgtggagatgaaagaacccgatggtgaacaaagtcagacagacgcacagaataat
aaaaaagaagataaaaaagaagatgctacaaagtcttcgacgagcacttatgaactcccc
tgggttgaaaaatacagaccgctgaagctgaatgaaatagttggaaatgaagaaactgtc
agcagattggaggtttttgccagagagggaaatgtacccaacatcattattgctggacct
cctggcactggaaaaacaacaagcattttgtgtttggccagagctcttctgggcccggca
atgaaggatgctgtgctcgagttgaatgcctcaaatgatcgaggtatcgacgttgtccga
aacaagatcaagatgtttgcccagcaaaaagttactctccccaaagggcgtcacaaaatc
atcattctggatgaagcggacagcatgactgatggagcacagcaggctctgaggagaaca
atggagatctattcgaagaccaccagatttgccttagcctgcaatgcatcagataaaatt
atagagccaattcagtcacgctgtgcagtgctgcgctacagtaagctgagggatgaacaa
atcatgatgcggctgatggaggtggtggagaaagagaacttgcacaccactaacgatgga
ctggaggccattatcttcactgcccaaggagacatgagacaggcactaaacaacctgcag
tccacccattctggatttggttttatcaacagtgacaatgtgttcaaggtatgtgatgag
ccacaccccctgctggtaaaaaacatgcttgaacactgtgtcagtgccaacatcgacgag
gcttacaagataatatcacagctttggtcacttggctactctcctgaagatatcataggg
aacatcttcagagtgtgtaagaccttccaaatgccggagtacttgaagctggagtatatc
aaggagattggctacacccacatgaaggtagcagaaggagtaaactctctcctccagctg
gctggactgttaggacgtctctgcagtaagactgcaacacctgaggccagctaa
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