Ictalurus punctatus (channel catfish): 108278498
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Entry
108278498 CDS
T04658
Symbol
gabra1
Name
(RefSeq) gamma-aminobutyric acid receptor subunit alpha-1
KO
K05175
gamma-aminobutyric acid receptor subunit alpha
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04080
Neuroactive ligand-receptor interaction
ipu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108278498 (gabra1)
04082 Neuroactive ligand signaling
108278498 (gabra1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ipu04040
]
108278498 (gabra1)
Ion channels [BR:
ipu04040
]
Ligand-gated channels
GABA-A
108278498 (gabra1)
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GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
CytochromB561_N
Motif
Other DBs
NCBI-GeneID:
108278498
NCBI-ProteinID:
XP_017347411
Ensembl:
ENSIPUG00000016648
UniProt:
A0A2D0SY10
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Position
18:8923718..8955772
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AA seq
456 aa
AA seq
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MMWARLGAAWIWAWLLAVNVLGKSSNQNGSDEQKDNTTVFTRILDSLLDGYDNRLRPGLG
ERVTEVKTDIFVTSIGPVSDHDMEYTIDVFFRQSWKDERLKFKGPMAVLRLNNLMASKIW
TPDTFFHNGKKSVAHNMTMPNKLLRITEEGTLLYTMRLTVRAECPMHLEDFPMDAHACPL
KFGSYAYTRAEVVYVWTRGAAQSVVVAEDGSRLNQYDLMGQTVDSGVVQSSTGEYVVMTT
HFHLKRKIGYFVIQTYLPCIMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARN
SLPKVAYATAMDWFIAVCYAFVFSALIEFATVNYFTKRGYAWDGKSVVPEKQKKKKESLL
KKNNTYTAATATAFAPNIARDPGLATIAKSAPPPPTEPKEEPKPKPAEAKKTFNSVSKID
RIARIAFPLLFGTFNLVYWATYLNKKPKIQDALTPH
NT seq
1371 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgggctcgactgggagcagcgtggatctgggcctggttactggcggtcaacgtt
ctgggcaaaagctcaaatcagaacggatcggacgagcagaaggacaacaccaccgtcttc
acccgcatcctggacagtctgctggacggctacgataaccgtctcaggcccggacttggt
gagcgcgtgactgaggtgaagaccgacatcttcgtgacgagtatcggccccgtctccgat
cacgacatggaatacaccatagacgtgttcttcagacagagctggaaggacgagcgtttg
aagtttaaaggtccaatggccgtgctgcgcctcaacaacctgatggccagtaagatctgg
acccccgacacgttcttccacaacggcaagaaatcggtagcgcacaacatgacaatgccc
aataaactgctgcgcatcacggaggagggaacgctgctctacaccatgaggttgacggtg
agagctgagtgcccgatgcacttggaggatttccccatggatgctcacgcctgtccactc
aaatttggcagctatgcgtacacgcgggcggaggtggtgtacgtgtggacgagaggagca
gctcagtcagtggtggtggctgaagacggatctcggctgaaccagtacgacctgatggga
cagacggtggactcaggagtcgtccagtccagcaccggcgagtacgttgtcatgacaaca
cacttccacctgaaaaggaagatcggctactttgtcattcagacgtatctgccatgcatc
atgaccgtcatcctgtcacaggtttccttctggctcaacagagaatccgttcctgctaga
actgtgtttggagtgaccactgtcctgaccatgaccactctgagtatcagcgctagaaac
tctctgcccaaagtggcctacgccaccgctatggactggttcatcgccgtctgctatgcc
ttcgtgttctccgccctcatcgaattcgccactgtcaactatttcacaaagaggggttat
gcctgggacgggaagagcgttgtacctgaaaagcaaaagaagaaaaaggagtctctcctg
aagaagaacaatacctacacagctgccacggcaaccgctttcgcccccaacatcgccaga
gatccaggattagcgaccatcgccaaaagcgcacctcctccaccaaccgagccaaaagaa
gagccgaaacccaaaccggctgaggcaaagaaaacgttcaacagtgtgagcaaaattgac
cggatcgccagaatagcgtttcctctactctttggtacctttaacctggtctactgggca
acttatctaaataaaaaacccaaaattcaagacgcgctaacaccccactaa
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