Ictalurus punctatus (channel catfish): 108278500
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Entry
108278500 CDS
T04658
Symbol
grin1a
Name
(RefSeq) glutamate receptor ionotropic, NMDA 1a isoform X4
KO
K05208
glutamate receptor ionotropic, NMDA 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04020
Calcium signaling pathway
ipu04080
Neuroactive ligand-receptor interaction
ipu04082
Neuroactive ligand signaling
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09132 Signal transduction
04020 Calcium signaling pathway
108278500 (grin1a)
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
108278500 (grin1a)
04082 Neuroactive ligand signaling
108278500 (grin1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
ipu04040
]
108278500 (grin1a)
Ion channels [BR:
ipu04040
]
Ligand-gated channels
Glutamate (ionotropic)
108278500 (grin1a)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Lig_chan
ANF_receptor
Lig_chan-Glu_bd
SBP_bac_3
Ion_trans_2
Peripla_BP_6
Motif
Other DBs
NCBI-GeneID:
108278500
NCBI-ProteinID:
XP_017347416
Ensembl:
ENSIPUG00000013467
UniProt:
A0A2D0SY15
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All DBs
Position
18:6014276..6048952
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AA seq
947 aa
AA seq
DB search
MRFFVPFILLSCSCALGGCEMKIVNIGAVLSQKRYEQVFKDAVNQASVVYGRDRFKLNAI
SVTHKANAIQMALSVCEDLISSQVYAILVSHPPQSSDHLTPTPVSYTAGFYRIPVVGLTT
RMSIYSDKSIHLSFLRTVPPYSHQAHVWFDMMREFRWNHIILIVSDDHEGRAAQKRLETL
LEERETKNKKRNYENLDQLSYDNKRGPKAEKVLQFNQETNLTALLLEAKELEARVIILSA
SEDDAAAVYKTARFLNMTGSGYVWLVGEREMSGKALSEAPDGLIGLQLINGKNESAHISD
AVAVVAQSIQELFEKENITEPPRGCVGNTNIWKTGPLFKRVLMSSKYPEGLTGRVEFNDD
GDRKYAHYSILNYQKSRLIQVGIYNGTQVVLNKQRKIIWPGGDTDRPKGFQMSTWLKIVT
IHQEPFVYVKPTMLDGTCREEYTPNGVLIKKVICTGPNETIPGRPTVPQCCYGFCVDLLI
KLAMTMNFTYEVHLVADGKFGTQERVNNSNKKEWNGMMGELLGGLADMIVAPLTINNERA
QYIEFSKPFKYQGLTILVKKEIPRSTLDSFMQPFQSTLWLLVGLSVHVVAVMLYLLDRFS
PFGRFKVNSEEEEEDALTLSSAMWFSWGVLLNSGIGEGAPRSFSARILGMVWAGFAMIIV
ASYTANLAAFLVLDRPEERITGINDPRLRNPSDKFIYATVKQSSVDIYFRRQVELSTMYR
HMEKHNYESAAEAIQAVRDNKLHAFIWDSAVLEFEASQKCDLVTTGELFFRSGFGIGMRK
DSPWKQNVSLAILSSHENGFMEDLDKTWVRYQECDSRSNAPATLTFENMAGVFMLVAGGI
AAGIFLIFIEIAYKRHKDARRKQMQLAFAAVNVWRKNLQPSSSVETQDDRKSGRAEPDPK
KKPSFRSISTTLASSIKRRRSSKDTQYPPTDITGQLNLSDPSVSTVV
NT seq
2844 nt
NT seq
+upstream
nt +downstream
nt
atgcgcttttttgtgccctttattctgctctcctgctcctgcgctctgggaggctgcgag
atgaaaatcgtgaacatcggcgcggtgctgagccaaaagcgctacgagcaagtgtttaag
gatgcggtgaaccaggccagcgtggtgtacggcagagacaggtttaaactcaacgccatc
tccgtgacgcacaaagccaacgctattcagatggcgctgtccgtgtgtgaggacctcatc
tccagccaggtctatgcgattttggtgagccaccctccacagtccagtgaccacctcaca
cctacaccggtctcctatactgcaggcttctaccgtatccctgtagttggccttacaacc
aggatgtcaatctactccgataagagtattcatctttccttcctgcgcactgtgccgcct
tactcgcaccaggcgcacgtgtggttcgacatgatgcgtgagttccgctggaaccacatc
atcctgatcgtcagcgacgaccacgaaggtcgagccgcacagaagagactcgagaccctt
ctggaggagagggagaccaagaataaaaaaaggaactatgaaaacctcgaccaactgtcc
tatgacaacaagcgaggacctaaggcagagaaagtcctccagttcaaccaagagactaac
ttaactgccctgctgctggaggccaaggagctggaggctcgcgtgatcattctgtccgcc
agtgaagacgacgctgctgccgtatacaagaccgctcggtttctcaacatgactggctct
ggctacgtatggttagtcggagagcgggagatgtctggtaaagctctgagtgaagctcct
gatggactaattggccttcagctcattaacggcaagaatgagtcagcacacatcagcgac
gcagtggcggtcgtggctcagtccattcaggagcttttcgagaaggagaacatcactgag
ccgcctcggggttgtgtgggcaacacaaacatctggaagactgggccgctctttaaaagg
gttctgatgtcatccaaatacccagaaggcttgacaggacgagtggagtttaatgatgat
ggagacaggaagtacgctcattacagcatccttaactaccagaagagcaggctgattcaa
gtcggcatttataatggaactcaggtggtgctaaataagcagaggaagatcatctggcct
ggaggagatacagacagaccgaaaggtttccagatgtctacatggctaaaaatagtcaca
atacatcaggagccttttgtgtacgtgaagccaacaatgctggatgggacctgcagggaa
gagtacacaccaaatggagtcctaattaaaaaggtgatctgcactggaccaaatgaaacc
atcccaggacgcccaacagtccctcagtgctgttatggattctgcgttgacctactgatc
aagctggccatgactatgaactttacttatgaggtccatctggtggctgatgggaaattt
ggaacacaggaaagagtgaacaacagcaacaagaaggagtggaatggcatgatgggcgag
ctcctgggcggccttgcagacatgatcgtggctccactaacgataaacaatgaacgagct
cagtacattgaattctccaaaccgttcaaatatcagggcctcaccatccttgtgaaaaag
gaaatccctcgtagtacgctggactcgttcatgcagccgttccagagcacgctgtggctg
ctggtgggtctatcggtgcatgtggtggcggtgatgctttacctactagaccggttcagc
ccattcggaaggtttaaagtaaacagtgaagaagaagaagaagatgccctcaccttatcc
tcggctatgtggttctcctggggagtgttgctgaactctggaattggagaaggtgccccg
cgtagcttctcagcgagaatcctaggtatggtgtgggccggctttgctatgatcattgta
gcatcctatactgccaacctggctgccttcttggtgctggaccggcctgaggagcgcatc
accggcatcaatgacccgaggttgaggaacccatcagacaagtttatctacgccacagtg
aagcagagttcggtggatatctacttccggcgccaggtcgagctgagcaccatgtatcgc
cacatggagaagcacaactacgagagcgccgctgaggccatccaggctgttcgggacaac
aagctgcatgctttcatctgggactctgcggtgctggagtttgaagcctcgcagaagtgc
gacctggtgaccacgggagagctgtttttccgttcgggctttggcataggcatgcgcaag
gacagcccctggaaacagaatgtgtccctggctattctcagttcccatgagaacggcttc
atggaggacctggataaaacctgggtgagataccaggagtgtgactcaaggagcaatgcc
ccagccacactcacctttgaaaacatggcaggggtctttatgctggtagctggaggcatt
gcagcagggatcttcctcatctttattgagatcgcatacaagcgacacaaagacgcccgc
aggaagcagatgcagctagcctttgcggccgtcaacgtctggagaaagaacctgcagccc
tcttcctctgtagagactcaggatgataggaaaagtggtagagcagagcccgaccccaaa
aagaaaccctcttttaggtccatcagtaccaccctggcctccagcatcaagagacgtagg
tcctccaaagacacgcagtacccacctacagacatcacgggccagctcaacctgtccgac
ccatctgtcagcaccgtggtgtga
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