Ictalurus punctatus (channel catfish): 108278578
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Entry
108278578 CDS
T04658
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03020
RNA polymerase
ipu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108278578
09124 Replication and repair
03420 Nucleotide excision repair
108278578
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108278578
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108278578
Enzymes [BR:
ipu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108278578
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108278578
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108278578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
108278578
NCBI-ProteinID:
XP_017347518
Ensembl:
ENSIPUG00000015595
UniProt:
W5U719
LinkDB
All DBs
Position
2:complement(18408093..18419208)
Genome browser
AA seq
1174 aa
AA seq
DB search
MYDQDEDIQYDEDDDEITPDLWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPPIDLQAEAQHASGEVEEPPRYLLKFEQIYLSKPTHWERDGAPSPMMPNEARLRNLTY
SAPLYVDITKTIIKEGEEQQQTQHQKTFIGKIPIMLRSTYCLLSGLTDRDLCELNECPLD
PGGYFIINGSEKVLIAQEKMATNTVYVFAKKDSKYAYTGECRSCLENSSRPTSTIWVSMM
ARGGQGVKKSAIGQRIVSTLPYIRQEVPIIIVFRALGFVSDRDILEHIIYDFDDPEMMEM
VKPSLDEAFVIQEQNVALNFIGSRGAKPGVTKERRIKYAKEVLQKEVLPHVGVSDFCETK
KAYFLGYMVHRLLLAALGRRELDDRDHYGNKRLDLAGPLLAFLFRGMFKNLLKEIRIYAQ
KFIDRGKDFNLELAIKTRIISDGLKYSLATGNWGDVKKAHQARAGVSQVLNRLTFASTLS
HLRRVNSPIGRDGKLAKPRQLHNTLWGMVCPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEISPAAIADATKIFVNGCWVGIHKDPEQLMNTLRKLRRQMDIIVSE
VSMIRDIREREIRIYTDAGRICRPLLIVEKQKLLLKRRHIDQLKEREYNNYSWQDLVASG
VVEYIDTLEEETVMLAMTPDDLQEKGVAYCSTYTHCEIHPSMILGVCASIIPFPDHNQSP
RNTYQSAMGKQAMGVYITNFHVRMDTLAHVLYYPQKPLVTTRSMEYLRFRELPAGINSIV
AIASYTGYNQEDSVIMNRSAVDRGFFRSVFYRSYKEQESKKGFDQEEIFEKPKREECQGM
RHAIYDKLDDDGLIAPGVRVSGEDVIIGKTVTLPENDDELDSTNRRYTKRDCSTFLRTSE
TGIVDQVMVTLNQEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSANKGEIGDATPFNDAVNVQKVSNLLSEYGY
HLRGNEVLYNGFTGRKLTSQIFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQIAHGAAQFLKERLFEASDPYQVHVCNLCGLMAIANTRTHTYECRGC
RNKTQISLVRLPYACKLLFQELMSMSIAPRMMTT
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaccaagacgaagatattcagtatgacgaggatgatgatgagatcactcctgat
ctgtggcaggaagcctgctggattgttatcagctcttactttgatgagaaaggtttggtg
cggcagcagctggactcattcgatgagttcattcagatgtctgtgcagaggatcgtggag
gatgcaccacccattgacctgcaggccgaggcacagcacgcctccggagaggtggaggaa
ccgcctcgctacttgctgaagttcgagcagatctacctgtccaagccgacacactgggaa
agagacggcgctccgtcacccatgatgcccaacgaagcacgacttcgaaacctcacgtac
tctgctcctttatacgtggatatcaccaagacgatcataaaggagggagaggagcagcag
cagactcagcaccagaaaaccttcattggcaaaattcccatcatgctccggtccacctac
tgcctgctgagcggcctgacagaccgtgatctgtgcgagctgaacgagtgtcctctcgac
ccgggcggctacttcataatcaacggctctgagaaggtgctgatcgcccaggagaaaatg
gccacgaatacagtgtacgtgttcgccaagaaggactcaaagtacgcctacacaggcgag
tgcaggtcctgtttggagaactcctccagacccaccagcaccatctgggtcagcatgatg
gccagaggtggacagggagtgaagaagagcgcgatcggtcagaggatcgtctccaccttg
ccatacatcagacaagaagttcccatcatcatcgtgttccgagcactgggcttcgtgtcc
gacagggacatcctggaacacatcatctacgactttgacgatcccgagatgatggaaatg
gttaagccgtctcttgacgaggcattcgtgatccaagagcagaacgtggctctgaacttc
attgggtccaggggggccaaacccggagtcactaaagagagaaggataaaatatgccaag
gaggtgctgcagaaggaggtgctgcctcatgtcggcgtgtccgacttctgcgagaccaag
aaggcgtactttttaggttatatggtgcacagactcctgctggcggctctgggcagaaga
gagctggacgacagagatcattacggcaacaagaggctggatctggccgggccactactg
gcgttcctattccgagggatgttcaagaacctgctgaaggagatcaggatctatgctcag
aagttcatcgaccgtgggaaagacttcaacctggagctggccatcaaaacgcgcatcatc
tccgacggcctgaagtattcgctggccacggggaactggggcgacgtcaaaaaagcccat
caggctcgagctggagtgtctcaggtgttgaacagactgacgttcgcctcgacgctttct
cacctccggcgcgtgaactctcccatcggccgagacggcaagctggccaagccaaggcag
ctccataacactctgtggggtatggtgtgtcccgccgagacgcctgagggccatgctgta
ggtctggtgaagaacttggcgctgatggcgtacatctccgtgggttctcagccatccccc
atcctggagttcttggaggagtggagcatggagaacctagaggagatctcacctgctgct
attgcggacgctacaaagatctttgtgaacggctgctgggtgggaatccacaaagacccg
gagcagctgatgaacacactgaggaagctcaggaggcagatggacatcattgtgtctgag
gtgtcgatgatccgtgacatccgagagcgagagatccggatttacacggacgctgggcgg
atctgtcgtccactgctcatcgttgagaagcagaagctcttgctgaagagacgccacatt
gatcagctcaaagagcgagagtacaacaactacagctggcaggatctggtggcgagcggc
gtagtagagtacatcgatactctggaggaggagactgtgatgttggccatgaccccggat
gacctccaggagaagggcgtagcctactgttccacctacactcactgtgagatccatcca
tctatgatcctgggagtgtgtgcatccatcattcccttccctgatcacaatcagtctccc
aggaacacttaccagtctgctatggggaagcaggctatgggtgtgtacatcaccaacttc
cacgtgcgtatggacactctggctcatgtgctgtattacccgcagaagcctctggtcaca
acacgctccatggagtacctgcgtttcagagagctgccagcaggcatcaactctatcgtg
gccattgcctcatacacgggttacaatcaagaggactccgtcatcatgaaccgttcggcc
gtggatcgaggcttcttcaggtcagtcttttaccgctcctataaagagcaggagtcgaag
aaaggcttcgaccaggaggagatttttgagaaaccgaagcgtgaggagtgtcaaggaatg
cgccatgccatctacgataagctggatgacgacggcctgatagcaccaggcgtgcgcgtg
tccggtgaggacgtgatcatcggaaagacggtcacgctacccgaaaacgatgacgagctg
gacagcacgaaccggcgctacacaaagagagactgcagcacgttcctgcgcaccagcgaa
accggcatcgtcgaccaggtcatggtcacgctcaaccaggagggctacaagttctgcaag
atccgggtgcgctcggttcgaatccctcagatcggagacaagttcgccagtcgacacgga
cagaagggaacctgcgggattcagtacaggcaggaggacatgccattcacatgtgaagga
attacaccagacatcatcatcaacccccacgctatcccgtccagaatgacagtcggtcac
ttgatcgagtgtctgcagggaaaggtttctgcgaataaaggggagattggtgacgccacg
ccatttaacgacgctgtgaacgtgcagaaagtgtctaacctgctgtctgagtacggctac
cacctcagaggaaacgaggtgctgtataacggtttcacgggtcgcaagctgacctctcag
atcttcctcggccccacttactaccagcgcctcaaacacatggtggatgacaagatccat
tcaagggcacggggtcctgtccagatcctcaacaggcagcctatggagggcagatcacga
gatgggggtctgcgtttcggagagatggagcgagattgtcagatcgctcatggtgcagct
cagttcctgaaggagcggctgtttgaggcatcggatccctaccaggtgcacgtgtgtaac
ctgtgcggcctcatggccatcgccaacacgcgcacacacacctatgagtgcaggggctgc
cgcaacaagactcagatctcgctggtgcggctgccgtacgcttgcaagcttctgtttcag
gagctcatgtctatgagcatcgccccacgcatgatgaccacctaa
DBGET
integrated database retrieval system
