Ictalurus punctatus (channel catfish): 108278618
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Entry
108278618 CDS
T04658
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108278618 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108278618 (cnot6a)
Enzymes [BR:
ipu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
108278618 (cnot6a)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108278618 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108278618 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_4
LRR_8
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
108278618
NCBI-ProteinID:
XP_017347561
Ensembl:
ENSIPUG00000019831
UniProt:
A0A2D0SYF4
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Position
18:11392556..11403882
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AA seq
556 aa
AA seq
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MPKEKYDPPDPRRMYTIMSSEEAASGKKSYWAELEISGKVRSLSTALWSLTHLTALHISD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQDIMNLYQEPDGTRRLLNYLLDNLAGTKRVSTEQPPPRSWVHLKEPD
RTRPAALFSVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKSIMQEILSCSADIISLQEV
ETEQYYNFFLLELKEHGYEGFFSPKSRARTMSESDRKHVDGCAIFYKTEKFSLVQKHTVE
FNQLAMANSEGSEVMLNRVMTKDNIGVAVLLELRKEMIEQSGKHLASMEKQLLLMANAHM
HWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGETNAIPLVLCADLNSLPDSGV
VEYLSTGGVDSTHKDFKDLRYIDCLTNFNCNGKNGTSSSRITHGFKLKSAYENGLMPYTN
YTFDFKGVIDYIFYSQPLLNVLGVLGPLDPHWLHDNNITGCPHPHIPSDHFSLFAQLELL
LPFSSLVNGLHVPGCR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgatccgccggacccaaggcggatgtacactataatgtcaagc
gaagaggcagctagtgggaagaagtcatactgggccgaactggagatcagtggcaaagtg
aggagcctgagcacagcgttgtggtctcttacccatctgactgctttgcacatcagtgac
aactccctctcacgcatccctccggacattgccaaactacacaacctggtgtacttggac
ctctcgtccaataagatcaggagcttgcctgccgagcttggcaacatggtatctctcagg
gaactgcttttaaataacaaccagttgcgagtcctgccttttgagcttggaaaattgttt
cagttacaaaccttgggtttaaaaggaaacccacttgcacaagacatcatgaacctctac
caggaacccgatgggacgcgccggctcctgaactacctgctggacaatcttgcaggcacc
aagcgcgtctccacagaacagccccctcctcgctcatgggtacatcttaaggagcctgac
aggacacgaccagcagcattgttctctgtgatgtgctacaacgtactgtgcgataagtac
gccacacgccagctctacggttactgcccttcctgggctctcaactgggagtacaggaaa
aagtccatcatgcaggagatcctcagctgcagtgcagatatcatcagcctacaggaagtg
gagacagagcagtactacaactttttccttttggagctcaaagagcatggatacgagggt
ttcttcagccccaagtctcgtgccaggaccatgtcagagtctgaccgcaaacacgtagat
ggctgtgccatcttctataagacagagaagttcagccttgtgcagaaacacacagtggaa
tttaaccagctggccatggctaactcggagggctccgaggtcatgttgaacagggtgatg
accaaggacaacatcggggtcgcagtgctcctggagctgcgcaaggagatgattgagcaa
tctgggaagcatttggcaagtatggagaagcagctgctgttgatggctaatgctcacatg
cactgggacccggagtactcggatgtaaagctcgtccagaccatgatgttcctatcagaa
gtgaaaaacattgtggacaaggccacgcgcagcctcaagctctcctctgtgtctggggag
accaatgccatccctcttgtcctgtgcgctgacctcaactcgctgcctgactcgggtgtg
gtggaatacctgagcacaggtggtgtggacagcacgcataaggacttcaaagatctgcgc
tatattgactgcctgaccaactttaactgtaacggcaagaacggcacatccagcagcagg
atcacgcacggcttcaagctaaagagtgcctacgagaacggcctgatgccttataccaac
tacacctttgacttcaagggcgtgatcgattacatcttctactctcagcctctgctgaac
gtgctgggtgtgctcggcccgctggacccccattggctccatgataacaatatcactggt
tgcccgcatccccacatcccctctgatcacttctcactgtttgcacaactggagctgctc
ctgcccttctcgtctttggtcaacggtctccacgtgcctggttgcaggtag
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