KEGG   Ictalurus punctatus (channel catfish): 108278621
Entry
108278621         CDS       T04658                                 
Name
(RefSeq) pre-mRNA-splicing factor RBM22
  KO
K12872  pre-mRNA-splicing factor RBM22/SLT11
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108278621
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ipu03041]
    108278621
Spliceosome [BR:ipu03041]
 Complex B
  Other components
   Prp19-related factors
    108278621
 Complex C
    108278621
SSDB
Motif
Pfam: STL11_N zf-CCCH_RBM22 RRM_1 RRM_occluded zf_CCCH_4 Torus Nup35_RRM_2 zf-CCCH_2 zf-CCCH_4 RRM_3 zf-CCCH RRM_YTH1 RRM_5 zf-CCCH_10 RRM_PARP14_3 zf-CCCH_PARP12
Other DBs
NCBI-GeneID: 108278621
NCBI-ProteinID: XP_017347568
Ensembl: ENSIPUG00000019751
UniProt: A0A2D0SY08
LinkDB
Position
18:11219827..11234722
AA seq 426 aa
MATSLGSNTYNRQNWEDSDFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSVKDDMPRSDVNKEYYTQN
MEREIANSDGTRPVGALGKAPSASDMLLKLARTTPYYKRNRPHICSFWVKGECRRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVANKLLKRASTMPRLDPPEDKSITTLYIGGLA
DTITDSELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAETAAEKSFNKLIIHGHRLNV
KWGRSQAARGKDGEKEGVTESGIRLEPVPGLPGALPPPPVSTDDISANYFNLAPNTGPAV
MNLGIPPPPGVAMPPPPGFGPPMYPSMDPMAPPMPPPMTMRPPGQVHYPSQDPLRMGAHA
SRHGGS
NT seq 1281 nt   +upstreamnt  +downstreamnt
atggcgacttccttaggttctaacacgtacaacagacagaattgggaagattctgacttc
cctattctctgtcagacatgtttgggagagaatccatacatccgaatgaccaaagaaaag
tatggcaaagagtgcaagatctgtgcacgtccctttaccgtgttccgctggtgtcctggg
gtcaggatgcgttttaagaagacagaggtgtgtcagacctgcagtaagatgaaaaacgtt
tgtcagacctgcctgctggatctggagtacggtttacccattcaagtcagagacacaggg
ctgtcggttaaagatgacatgccaagatcggatgtgaacaaagagtactacacccagaac
atggagagagagattgcaaactctgatggcacacggccagtcggtgcactgggtaaagcc
cccagtgccagtgacatgctattgaagctcgctcgcaccactccttactacaagaggaac
agacctcacatctgctctttctgggtgaaaggagaatgccgtaggggagaggagtgccct
tacaggcatgagaagcccactgatccagatgatccgctggctgatcagaacattaaggac
cgctactatggcattaatgacccggtggctaataagctgttgaagcgagcctccaccatg
cctaggttagacccacctgaggacaagtccatcaccacactctacatcggaggcctagca
gatactattacagattcagaactcaggaaccatttctaccagtttggggagatccgcacg
atcaccgtagtgcagaggcagcagtgtgccttcatccagtttgccacgcgtcaggctgct
gagacggccgctgagaaatccttcaacaagctcatcattcatggccatcgtcttaatgtc
aaatggggcaggtcccaggcagcacgaggaaaagatggcgaaaaggaaggcgtgactgag
agtgggatcagactggagcctgtgcctggcctcccaggagcattgcctccaccacccgtc
tccaccgatgacatctcggctaactatttcaacttggcacctaacaccggccctgcagtc
atgaatttaggaatccctcctccccctggagtagccatgcctccacccccaggttttggc
ccccctatgtacccctccatggatcctatggcccctcctatgccacctccaatgaccatg
aggcctccaggccaggtgcattatccttcccaggatcctctgcgtatgggtgcccatgcc
agtcgccacggaggctcctag

DBGET integrated database retrieval system