Ictalurus punctatus (channel catfish): 108278621
Help
Entry
108278621 CDS
T04658
Name
(RefSeq) pre-mRNA-splicing factor RBM22
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108278621
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ipu03041
]
108278621
Spliceosome [BR:
ipu03041
]
Complex B
Other components
Prp19-related factors
108278621
Complex C
108278621
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
zf-CCCH_RBM22
RRM_1
RRM_occluded
zf_CCCH_4
Torus
Nup35_RRM_2
zf-CCCH_2
zf-CCCH_4
RRM_3
zf-CCCH
RRM_YTH1
RRM_5
zf-CCCH_10
RRM_PARP14_3
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
108278621
NCBI-ProteinID:
XP_017347568
Ensembl:
ENSIPUG00000019751
UniProt:
A0A2D0SY08
LinkDB
All DBs
Position
18:11219827..11234722
Genome browser
AA seq
426 aa
AA seq
DB search
MATSLGSNTYNRQNWEDSDFPILCQTCLGENPYIRMTKEKYGKECKICARPFTVFRWCPG
VRMRFKKTEVCQTCSKMKNVCQTCLLDLEYGLPIQVRDTGLSVKDDMPRSDVNKEYYTQN
MEREIANSDGTRPVGALGKAPSASDMLLKLARTTPYYKRNRPHICSFWVKGECRRGEECP
YRHEKPTDPDDPLADQNIKDRYYGINDPVANKLLKRASTMPRLDPPEDKSITTLYIGGLA
DTITDSELRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAETAAEKSFNKLIIHGHRLNV
KWGRSQAARGKDGEKEGVTESGIRLEPVPGLPGALPPPPVSTDDISANYFNLAPNTGPAV
MNLGIPPPPGVAMPPPPGFGPPMYPSMDPMAPPMPPPMTMRPPGQVHYPSQDPLRMGAHA
SRHGGS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atggcgacttccttaggttctaacacgtacaacagacagaattgggaagattctgacttc
cctattctctgtcagacatgtttgggagagaatccatacatccgaatgaccaaagaaaag
tatggcaaagagtgcaagatctgtgcacgtccctttaccgtgttccgctggtgtcctggg
gtcaggatgcgttttaagaagacagaggtgtgtcagacctgcagtaagatgaaaaacgtt
tgtcagacctgcctgctggatctggagtacggtttacccattcaagtcagagacacaggg
ctgtcggttaaagatgacatgccaagatcggatgtgaacaaagagtactacacccagaac
atggagagagagattgcaaactctgatggcacacggccagtcggtgcactgggtaaagcc
cccagtgccagtgacatgctattgaagctcgctcgcaccactccttactacaagaggaac
agacctcacatctgctctttctgggtgaaaggagaatgccgtaggggagaggagtgccct
tacaggcatgagaagcccactgatccagatgatccgctggctgatcagaacattaaggac
cgctactatggcattaatgacccggtggctaataagctgttgaagcgagcctccaccatg
cctaggttagacccacctgaggacaagtccatcaccacactctacatcggaggcctagca
gatactattacagattcagaactcaggaaccatttctaccagtttggggagatccgcacg
atcaccgtagtgcagaggcagcagtgtgccttcatccagtttgccacgcgtcaggctgct
gagacggccgctgagaaatccttcaacaagctcatcattcatggccatcgtcttaatgtc
aaatggggcaggtcccaggcagcacgaggaaaagatggcgaaaaggaaggcgtgactgag
agtgggatcagactggagcctgtgcctggcctcccaggagcattgcctccaccacccgtc
tccaccgatgacatctcggctaactatttcaacttggcacctaacaccggccctgcagtc
atgaatttaggaatccctcctccccctggagtagccatgcctccacccccaggttttggc
ccccctatgtacccctccatggatcctatggcccctcctatgccacctccaatgaccatg
aggcctccaggccaggtgcattatccttcccaggatcctctgcgtatgggtgcccatgcc
agtcgccacggaggctcctag
DBGET
integrated database retrieval system