Ictalurus punctatus (channel catfish): 108278720
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Entry
108278720 CDS
T04658
Name
(RefSeq) spectrin alpha chain, non-erythrocytic 1 isoform X1
KO
K06114
spectrin alpha, non-erythrocytic (fodrin)
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu04210
Apoptosis
ipu04517
IgSF CAM signaling
ipu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
108278720
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
108278720
09142 Cell motility
04820 Cytoskeleton in muscle cells
108278720
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ipu04812
]
108278720
Cytoskeleton proteins [BR:
ipu04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
108278720
Intermediate filaments
Intermediate filament-binding proteins
108278720
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
EFhand_Ca_insen
SH3_1
SH3_9
EF-hand_1
EF-hand_6
EF-hand_7
SH3_2
EF-hand_8
SH3_3
SH3_10
Tetrabrachion
Spectrin_3
Motif
Other DBs
NCBI-GeneID:
108278720
NCBI-ProteinID:
XP_047017804
Ensembl:
ENSIPUG00000003170
UniProt:
A0A979FC87
LinkDB
All DBs
Position
18:complement(19239858..19285792)
Genome browser
AA seq
2512 aa
AA seq
DB search
MSKFIKPKLKRMDTSGTKVLETADDIQERRQQVLDRYRRFKELSTVRRQKLEDSYRFQFF
RRDADELEKWIQEKLQIASDENYKDPSNLQGKLQKHQAFEAEVQANSGAIIKLDETGNLM
ISESHFASETIRSRLESLHRLWDLLLQKTKEKGVRLLQAQKLVQYLRECEDALDWITDKE
AIVTSEELGQDLEHVEVLQKKFEEFQTDLAAHEERVNEVNQDAAKLTQENHPETELILKK
QEEVNTAWQRLKGLAQQRQGKLFGAAEVQRFNRDVDETISWIKEKEQLMASDDFGRDLAS
VQALLRKHEGLERDLAALEDKVNTLGGEAERLQQTHPQNASQIHLKRDELITNWEQIRTL
AAERHARLNDSYRLQRFTADFRDLTSWVTEMKALINADELANDVAGAEALLDRHQEHKGE
IDAHEDSFKSTTEAGEALLNTGHYASEEVKEKLGILAEEKESLLELWELRRQQYEQCMDL
QLFYRDTEQVDNWMSKQEAFLLNEDLGDSLDSVEALLKKHEDFEKSLSAQEEKITALDEF
ATKLIQNNHYAKEDVATRRDALLSRRNALHDRAQSRRAALEDSFHLQQFFRDSDELKSWI
NEKMKTATDEAYKDPSNLQGKVQKHQAFEAELSANQSRIDGLQKSGQELIDGKHYASAEV
ATRMDEVSSQWKKLLEATELKGIKLREANQQQQFNRNVEDIELWLYEMEGHLASDDYGKD
LTSVQNLQKKHALLEADVAAHQDRIDGITIQARQFQEAGHFDADNIRKKQEALVARYEAL
KEPMAARKQKLSDSLRLQQLFRDVEDEETWIREKEPIASSTNRGKDLIGVQNLLKKHQAL
QAEITGHEPRIKAVTQKGEAMVDEGHFAAEDVKAKLAELHGRWDTLKGKATQRRQDLEDS
LQAQQYFADANEAESWMREKEPIVGSTDYGKDEDSAEALLKKHEALMSDLSAYGSSIQSL
KEQAQACRQQVAPTDDETGKELVLALYDYQEKSPREVTMKKGDILTLLNSTNKDWWKVEV
NDRQGFVPAAYVKKLDPTQSSSRENLLDEQGSIALRQDQIENQNVATKEVCSVSVRMKQV
EELYGTLQELGEKRKDMLEKSCKKFMLFREANELQQWINEKEGALTNEEVGSDLEQVEVL
QKKFDDFQKDLKANESRLRDINKVASELESEGLMAEEAPVMQAQQQELLGSAPGKDEADS
KTASPWKSIRVAVQTTANFNTIKELNNRWRSLQQLAEDRSNMLGSAHEVQRFHRDADETK
EWIEEKNQALNTDNYGHDLASVQALQRKHEGFERDLAALGDKVNSLGETAERLIQSHPEA
VDDIQEKCTELNTAWSSLVGRADQRKDKLGNSHDLQRFLSDFRDLMSWINGIRGLVSSDE
LAKDVTGAEALLERHQEHRTEIDARAGTFQAFEQFGQQLLARGHYASPEIQQKLEALDRE
RADLEKAWVQRRMMLDQCLELQLFNRDCEQAENWMAAREAFLATDDKGDSLDSVEALIKK
HEDFDKAINVQEEKIAALQSFADQLISADHYAKPEIFKRRNEVLDRWRRLKAQMIEKRSK
LGESQSLQQFSRDVDEIEAWISEKLQTATDESYKDPTNIQLSKLLSKHQKHQAFEAELHA
NADRIRGVIDTGNALIQRGACAGSEDAVKSRLVALDEQWQFLVNKSAEKSQKLKEANKQQ
NFNTGIKDFDFWLSEVEALLASEDYGKDLASVNNLLKKHQLLEADISAHEDRLKDLNGQA
DSLMASNAFDTSQVKDKRDAVNGRFTKIKSMAAGRRAKLNESHRLHQFFRDLDDEESWIK
EKKLLVSSEDYGRDLTGVQNLRKKHKRLEAELGAHEPAIQSVLDTGKKLSDDNTIGQDEI
QQRLAQFVEHWKELKDLAAARGQRLEESLEYQQFVANVEEEEAWINEKLNLVGSEDYGDT
LAAVQGLLKKHEAFETDFTVHRDRVNDVCSNGDELINKENHHVDNITAKMKSLRDKVTEL
ERAAAQRKAKLDENSAFLQFNWKADVVESWIGEKENSLKTDDYGRDLSSVQTLLTKQETF
DAGLQAFQQEGITNITALKDQLLAAKHVQSKAIEARHATLMKRWNQLLSNSAARKKKLLE
AQEHFRKVEDLFLTFAKKASAFNSWFENAEEDLTDPVRCNSLEEIRALREAHDAFRASLS
SAEADFNQLAELDRQIKSYHVVSNPYTWFTMEALEETWRNLQKIIKERELELQKEQRRQE
ENDKLRQEFAQHANAFHQWLQETRTYLLDGIAYRRVIRVYQYEVDDDLSGRSCMVEESGT
LESQLEATKRKHQEIRAMRSQLKKIEDLGAAMEEALILDNKYTEHSTVGLAQQWDQLDQL
GMRMQHNLEQQIQARNTTGVTEEALKEFSMMFKHFDKEKSGRLNHQEFKSCLRSLGYDLP
MVEEGEPDPEFESILDTVDPNRDGNVSLQEYMAFMISRETENVKSSEEIESAFRALSAEN
KPYVTKEELYQNLTKEQADYCISHMKPYLDSKGRELPSAFDFVEFTRSLFVN
NT seq
7539 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagtttattaaacccaaactgaagagaatggataccagcggcacgaaagttctg
gagacagccgatgacatccaggagcgtcggcagcaggtcctggaccgttaccggcgcttt
aaggagctgtcaacggtgcgcaggcagaaactcgaggactcgtaccgcttccagttcttt
cgccgtgatgcggatgagctggagaaatggatccaggagaagctgcagatcgcttctgat
gagaactacaaggaccccagcaaccttcagggaaagctccagaaacaccaggcctttgaa
gcggaggtgcaggccaactctggtgccatcatcaaactggacgaaactggcaacctcatg
atttccgagagccacttcgcctccgagaccatccggagtcgcttagagtcgctgcatcgg
ctgtgggatctgctgctgcagaagactaaggagaaaggtgtgcgtctgctgcaggcccag
aaactggtgcagtacctgagggagtgtgaggatgccctggactggatcacggacaaggaa
gccattgtcacctctgaggagctgggtcaggacctggagcatgtggaggtcctgcagaag
aagtttgaggagttccagacagacctggcagcccacgaggagcgcgtgaacgaggtgaac
caggacgcagctaagctaactcaggagaaccacccagagaccgagctgatcctgaagaag
caggaggaggtgaacacggcatggcagaggctgaagggtctggcccagcagagacaggga
aaactgttcggagccgccgaggtgcagcgtttcaaccgggatgtggacgaaaccatcagc
tggatcaaagagaaagagcagctcatggcctctgacgatttcggacgtgacctggccagt
gttcaagccctgctgcgcaaacatgaggggctcgagagggacctggctgccctggaggat
aaggtgaacactctgggtggtgaagcagagcgtctgcagcagactcacccccagaacgcc
tctcagatccacctcaagagagacgagctcattaccaactgggagcagatccgcacgctg
gctgccgagcgccacgcccgcctcaacgactcctataggcttcagcgtttcaccgctgat
ttccgcgacctcaccagctgggtgactgagatgaaggctctaatcaatgctgacgaactg
gccaatgacgtcgctggggctgaagcgctgctcgaccgacaccaggaacacaagggagag
atcgatgcccacgaggacagctttaaatccacaaccgaggcaggggaggctctcctgaac
accggacactacgcgtcagaggaggtcaaggagaagctgggaattctagcggaggagaag
gagtctctgctggagctgtgggagctgcgcagacagcagtatgaacagtgcatggacctg
cagctcttctacagggacactgagcaggtcgacaactggatgagcaagcaggaggctttc
cttctgaacgaggacctgggtgactctctggacagcgtcgaggccctgctgaagaaacac
gaagactttgagaaatcactcagtgcccaggaggagaagatcactgccctggatgaattc
gccaccaagctgatccagaacaatcactacgccaaggaggatgtggccacccgcagagat
gcattgctgagcagacgtaacgcgctgcacgatcgcgctcagtcccgccgcgctgccctg
gaggactccttccacctgcagcagtttttccgtgactcggatgagctcaagagctggatc
aacgagaagatgaagaccgccacggacgaggcctacaaagacccctccaacctgcaggga
aaagtgcagaagcaccaggccttcgaggcagagctttccgccaatcagagccgtatcgac
ggtctgcagaagtcgggtcaggagcttattgacgggaaacactatgcctctgctgaggtg
gccactcgcatggacgaggtcagctcccagtggaagaaacttttggaagccactgagctc
aaaggcattaagctgcgtgaagccaaccagcagcaacagtttaaccgtaacgtagaggac
atcgagctgtggctctatgagatggagggtcacctggcctctgatgactacggcaaagac
ctgaccagtgttcagaacctgcagaagaaacatgccttgctggaggctgacgtggctgca
caccaggaccgcatcgacggcatcaccatccaggcccggcagttccaggaagccggccac
ttcgatgccgataacatccggaagaagcaggaggctctggtagctcgctacgaggctctg
aaggagcccatggctgcacgaaagcagaagctgtcggactctctgcggctgcagcagctg
ttccgggacgtggaggacgaggagacgtggatcagagagaaggaacccatcgcttcatct
accaacaggggtaaagacctgattggtgtgcagaacctgctgaagaagcaccaggccctg
caggcggagatcaccgggcacgagccccgcatcaaggctgttacccaaaagggcgaggcc
atggtggatgaggggcactttgctgctgaggatgtgaaggccaagctggcagagctgcac
ggtcgctgggacactctgaaagggaaggcaactcagcgaaggcaggatctggaggactcc
ttgcaggcccagcagtacttcgctgatgccaacgaggccgagtcctggatgagggagaag
gagcccattgtaggcagcaccgactacggcaaggacgaggactcggctgaggccctgctg
aagaaacacgaggcactgatgtcagacctgagcgcttatggaagcagcatccagtccctg
aaggaacaggctcaggcctgcaggcaacaagttgctcctactgatgatgagaccggtaag
gagttggtgcttgccctctatgactaccaggaaaaaagtcctcgtgaagtcaccatgaag
aaaggagacatcctcaccctgctcaacagcaccaataaggattggtggaaagtggaggtg
aacgacaggcagggctttgtgccggcggcatacgttaaaaagctggacccgactcagtcg
tcctcccgcgagaacctgctggacgaacagggcagcatcgcgctacgccaggatcagatc
gaaaaccagaacgtggccaccaaggaggtgtgcagcgtgtctgtgcgcatgaagcaggtg
gaggaactgtatggcaccctgcaggaactgggcgagaagcggaaggacatgctagagaag
agctgcaagaagtttatgctgttccgcgaggccaacgagctgcagcagtggatcaacgag
aaggagggagcgctgaccaacgaggaggtggggtctgacctcgaacaggtggaggtgctg
cagaagaagtttgatgatttccagaaggatctgaaggcaaacgagtctcgtctgagggac
atcaacaaggtggcatcagagctggagtcggagggactgatggctgaggaggctccagtg
atgcaggctcagcaacaagagctgttgggctcagctcctggcaaggatgaagctgattca
aaaactgcctctccctggaagtctattcgcgtggctgtccaaacgacggctaactttaat
actattaaggagctgaataaccgctggagatcgctgcagcagctagcagaggacaggagt
aacatgctgggaagcgcccacgaggtgcagaggttccacagggatgccgatgagaccaaa
gaatggattgaggagaagaaccaggccctaaacaccgacaactatggtcacgacctggcc
agcgttcaggccctacagcgcaaacacgagggctttgagagagacctggccgctctggga
gacaaggtgaactctctgggcgagacagccgagcgtctaatccagtcccatcccgaggct
gtggacgatattcaggagaaatgcaccgagctgaacacggcctggagcagcctggtggga
cgcgccgaccagcgcaaggacaaactgggcaactcgcacgacttgcagcgcttcctcagc
gacttcagggatctgatgtcctggatcaacggtatccgtggacttgtgtcttctgatgag
ctcgccaaggacgtgaccggagctgaagcactgctggagagacaccaggagcacaggacc
gagatcgacgcccgtgctggaaccttccaggcctttgagcagtttgggcagcagctgctg
gcacgtggtcactacgccagtcctgagatccagcagaaactggaggctctggaccgcgag
agggcagacctggagaaggcctgggtgcagcgcaggatgatgctggatcagtgcctggag
ctgcagctgtttaaccgtgactgtgagcaggctgagaactggatggcagcgagagaagct
ttcctggccaccgacgacaagggcgactccctcgacagtgtggaggctctcatcaagaag
cacgaggacttcgacaaagccatcaacgtgcaggaggagaagatcgccgcactgcagtct
tttgctgaccagctcatttccgctgaccattacgccaaacccgagatcttcaaacgccgc
aatgaagtcttggacaggtggcgccgtctgaaggctcagatgattgagaaacgctccaag
ctgggtgaatctcagtctctgcaacagttcagcagagacgtggacgaaattgaagcctgg
atcagcgagaaactgcagacggccactgatgagtcctataaagacccgactaacatccag
ctgtccaagctgctgagcaagcaccagaaacaccaggcgttcgaggcagagcttcacgcc
aacgccgaccgtatccgaggtgtgatcgatacaggaaatgcgctcatccagaggggtgcg
tgtgcaggaagtgaggatgctgtcaagtctcgtctagtagctctggatgaacagtggcag
ttcctggtgaataaatcagctgagaaaagtcagaaactgaaggaggccaacaaacagcag
aacttcaacaccggcataaaggactttgacttctggctgtcggaggttgaagctcttctc
gcctctgaggattatgggaaggatctggcctcggtcaacaacctgcttaagaagcaccag
cttctggaggctgatatctctgcccatgaggatcgtctgaaggacctcaacggccaggct
gacagcctgatggccagcaatgccttcgacacctctcaggtcaaagacaagcgtgacgcc
gtgaacggacgctttactaaaatcaagagcatggctgctggacgccgagccaagctgaac
gagtcgcaccgcctgcaccagttcttcagagacctggatgatgaagaatcttggatcaaa
gagaagaagttgttggtgagttcggaggattatggacgtgatttgacaggagtacagaat
ctgaggaagaagcacaagaggctggaggctgagctgggagctcacgagccggccattcag
tctgtgctcgacacggggaagaagctgtctgatgacaacaccattgggcaggacgagatc
cagcagaggctggcgcagtttgtcgagcactggaaggagctgaaggatttggccgctgcc
agggggcagaggctggaggaatcgctggagtatcagcagtttgtggccaacgtagaggaa
gaagaagcctggattaatgagaagttgaacctggtgggaagtgaggattatggtgacacg
ctggcggctgtgcagggtttgctgaagaagcacgaggcgtttgagacagactttacggtg
cacagggaccgagtgaacgacgtgtgctctaacggagacgaactcatcaacaaggagaac
caccatgtggacaacatcacggccaagatgaagtccctgcgtgacaaagtgaccgagctg
gagagagctgctgctcagaggaaggccaagctggacgagaactccgccttcctgcagttt
aactggaaggctgatgtggtggagtcgtggataggtgagaaagagaacagtctgaagacg
gacgattacggaagagacctgtcatcagttcagacgctgctcacgaagcaggaaacattc
gatgccggacttcaggcgttccagcaggagggtatcaccaacatcactgcgctgaaggat
cagctcctcgcagccaagcacgttcagtcaaaagccatcgaggctcgtcacgctacgctg
atgaaacgctggaaccagctgctgtccaattccgcagcccgcaagaagaagctgctggag
gctcaggaacacttcagaaaggtggaggatctgttcctgacctttgctaagaaagcgtca
gcctttaacagctggtttgagaatgcagaggaagatctgaccgacccggtgagatgtaac
tctctggaggagatcagggctctgcgtgaggcccatgacgcgttccgtgcttccctgagc
tccgccgaggccgatttcaaccagctggccgagctcgaccggcagatcaagagctaccac
gtggtgtccaacccctacacctggttcaccatggaggctctggaggagacctggaggaac
ctgcagaagatcatcaaggagcgtgagctggagctgcagaaggagcagaggaggcaggag
gagaacgacaagctgagacaggagtttgctcaacacgctaatgccttccaccagtggcta
caggagaccaggacatatcttctggatggcatagcctatcgtcgggttatccgagtctat
cagtacgaagtcgatgatgatctttctggaaggtcctgtatggtggaagaatctggaact
ctggagtctcagctggaggccacgaagcgtaagcaccaggagatccgtgctatgcgcagc
cagctgaagaagatcgaggatctgggcgcggccatggaggaggcgctgatcctggacaac
aagtacacagagcacagtacggtaggactggcgcagcagtgggatcagctcgaccagctg
ggcatgaggatgcagcacaacctggagcagcagatccaagccagaaacaccacaggagtc
acagaggaggccctgaaggagttcagcatgatgttcaaacacttcgacaaagagaaatcc
ggtcgtctgaatcaccaggagttcaaatcctgcctgcgctcgctgggctacgacctgccc
atggtggaggaaggagaaccagacccagagttcgagtccatcctggacacggtggacccc
aacagggacggcaacgtgtccttgcaggagtacatggccttcatgatcagccgcgagacg
gagaacgtcaagtctagcgaggagatcgagagcgctttccgtgctctcagtgccgagaac
aaaccgtacgtcaccaaggaggagctctaccagaatctaaccaaggagcaggctgattac
tgcatctcgcacatgaagccatatttagacagtaaaggtcgcgagctcccgtccgccttc
gactttgtggagttcacacgctcgcttttcgtcaactga
DBGET
integrated database retrieval system
