Ictalurus punctatus (channel catfish): 108278723
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Entry
108278723 CDS
T04658
Name
(RefSeq) transcription elongation factor SPT6 isoform X2
KO
K11292
transcription elongation factor SPT6
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108278723
03036 Chromosome and associated proteins [BR:
ipu03036
]
108278723
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108278723
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
108278723
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
YqgF
HHH_7
HTH_44
Tex_central_region
SPT6_acidic
S1
Spt6_S1
HHH_3
S1_RRP5
HHH_9
SH2
Tex_N
Tex_YqgF
Motif
Other DBs
NCBI-GeneID:
108278723
NCBI-ProteinID:
XP_017347714
Ensembl:
ENSIPUG00000024533
UniProt:
A0A2D0SYF5
LinkDB
All DBs
Position
18:complement(15261505..15282230)
Genome browser
AA seq
1727 aa
AA seq
DB search
MSDFIESEAEESEEEFEEKDLKPKKTQRFMEDDDDEDEEENTEDQDEHGNLRGLIDDDNV
EEEEEEEEENRSGGGDSDSGEEVRHRRRKRDYDDLLDDDDLDLIEENLGVKMKRKKKYSR
VRTMDDDGEDDEKDQIADEIFTRDGDGEGEEGGEGGEALHPGDDEEEEEGEESDIDDFIV
DDDGQPITKKKGKKFTGYTDAALQEAQEIFGGDFDFAEFDPEAYDHAEEEEEDQDDEAWD
RPKKQTKRRVGRRSIFEIYEPSELESSHMTDQDNEIRSTDMPERFQLRTIPVKPAEDDEL
EEEAEWIYRNAFSTPTISMQESTDYLDRGTTTNFSRRGPSTIAKIKEALNFMRNQHFEVP
FIAFYRKEYVEPELNINDLWKVWQWDEKWTQLRTRKQNLTRLFQRMQSFQFEQISADPDK
PLADAIRPLDTADMERLKDVQSIEELSDVYNHFLLYYGRDIPRMQNASKVTKKKLKKIKE
VSEEDGEEAEVEEEEEEEEEQKGPDLKQASRRDMYSICQAAGLDGLAKKFGLTPEQFGEN
LRDSYQRHETEQFPAEPLELAKDYVCSQFNTPETVLEGTRYMVAMQIAREPLVRHVLRQT
FQERAKINIKPTKKGKKDVDEAHYAYSFKYLKNKAVKELSGDQFLKMCLAEDEGLLTIDI
SIDLVGVKGYGGDQTYFDEIKQFYYRDEFSHQVQEWNKQRTLAIERSLQHFLYPQMAKEL
KNKLVAEAKENIIKSCCRKLYNCLKVAPYRPDQQVEEDDDLMDDTQGKGIRVLGVAFASG
RDTPVFCALINGEGEVVDFLRLPYFLKRRNAWREEEREKKLQDIENLKKFLLSKKPHVVA
VAGENRDAHMLMEDIKRTVSELEQDSSLPTVGVELVDNELATLYMNSRKSEADFRDYPPL
LRQAVSVARKIQDPLVEFAQVCSSDEDILCLKLHPLQEHVVKEELLNALYCEFINRVNEV
GVDVNRAIAHPYMQSLVQYVCGLGPRKGSHLLKILKQNNTRLENRTQLVTMCHMGPKVFI
NCAGFIKIDTASLGDSTDSYIEVLDGSRVHPETYEWARKMAVDALEYDESAEDANPAGAL
EEILENPERLKDLDLDAFAEELERQGYGNKGITLYDIRAELSCRYKDLRAPYRPPNTEEV
FNLLTKETPETFYIGKLITSVVTGIAHRRPQGESYDQAIRNDETGLWQCPFCQQDNFPEL
SEVWNHFDSGSCPGQAIGVRTRLDNGVMGFIPTKFLSDKVVKHPEERVKVGMTVHCRIMK
IDIEKFNVDLTCRTSDLSDKNNEWKLPKDTYYDFDAETEDVKHDEEQKKKQQRTTYIKRV
IAHPSFHNINFKQAEKMMETMDQGDVVIRPSSKGENHLTVTWKVADGIYQHVDIREEGKE
NAFSLGHTLWINNEEFEDLDEITARYVQPMAAFARDLLGHKYFQDCSGGDRKKMEEILIK
AKKEKPTFIPYFVSACRDLPGKFLLGYQPRGKPRIEYVTITPDGFRYRSQIFPTVNGLFR
WFKDHYQEPVPGVTPSSSSRMRTPASVNATPANINFADLTRAVNALPRNVTSQMFNAIAA
VTGQGQNPNTTPAQWASSQYGYSGGSSAGGGGSSSAYHVFATPQQPMATPLMTPSYSYTT
PGQQQAMSTPQYPSSTPQSSHSHHQHPSSTPSSSSSSSRVRTPQPKTTSHTAVDWGKMAE
QWLQEKEAERRKKATRMTPRPSPSPMIESTPMSITGDATPLLDEMDR
NT seq
5184 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttcatcgagagcgaggcagaggagtctgaggaggagttcgaggagaaggat
ctgaagcccaagaagacacagaggtttatggaagatgacgatgatgaagacgaagaggag
aacacagaggatcaagatgaacatgggaacctgagaggacttattgatgatgacaatgtg
gaggaggaagaggaggaggaggaggagaatagaagcggaggaggcgacagcgactctgga
gaggaggtccgacatcgtcgccggaagcgtgattatgatgatcttctggatgatgatgat
ctggaccttattgaagagaacctgggggttaaaatgaagaggaaaaagaagtactcgcgt
gtgagaacgatggacgacgatggtgaagacgatgagaaagaccagattgcagatgagatc
tttaccagggatggtgatggggaaggtgaagaaggtggagaaggtggagaagcactgcac
ccaggggatgatgaagaggaagaagagggagaggaatcggacatagatgatttcattgtg
gatgatgatggacagcccatcaccaaaaagaagggaaagaagtttactggctatactgat
gctgctttacaagaggcccaagaaatttttggtggtgactttgactttgccgagtttgac
cccgaggcatacgatcatgctgaggaggaagaggaggatcaggatgatgaagcatgggat
cgaccaaagaagcagacaaagaggagagtgggccgccgcagcatcttcgagatctacgag
cccagtgagctggaaagcagtcatatgactgatcaagacaatgaaatacgttccacggat
atgcctgagaggttccagttgcgcactatacctgtgaagcctgctgaggatgatgaacta
gaggaagaggctgaatggatctatagaaatgctttctctacacccactatatccatgcag
gagagcacagactacctggaccggggaaccaccactaactttagcaggagaggccccagt
accattgcaaagatcaaggaggcgctcaactttatgaggaaccaacacttcgaggttccc
tttatcgctttctacaggaaggagtatgtggagccagagctcaacattaatgatctgtgg
aaggtgtggcaatgggatgagaagtggacccagctgaggacacgtaagcagaacctaacc
cgacttttccagagaatgcagtcatttcagtttgaacagatctctgctgaccctgataag
ccgctggctgatgccattcgcccactggacacagctgacatggaaagactaaaagatgtc
cagtctatagaagagctgagcgacgtgtacaaccacttcttgctctattatgggcgagac
attcccaggatgcagaatgcgtccaaagtcacaaagaaaaaactgaagaagatcaaggaa
gtgtcagaggaagatggtgaggaagctgaggtggaagaggaggaggaagaggaagaggag
cagaaggggccggatctgaagcaagcctcccgtagagacatgtacagcatctgccaggct
gcaggacttgatggactggctaagaagtttggtctcactcctgagcagtttggtgaaaac
ttgcgtgacagttaccagcgacacgagactgagcagttccctgcggagccattggagcta
gccaaggactatgtatgcagccagtttaacacaccagaaaccgttctagagggcacacgc
tacatggtggccatgcagattgcccgtgaacctctggtcagacatgtcctgagacagacc
ttccaggaaagggccaagatcaacatcaagcccactaagaagggcaagaaggatgtagat
gaggcacattatgcatattccttcaaatacttaaagaacaaggctgtgaaagagctaagt
ggagatcagttcctgaagatgtgcttggcagaagacgaaggactcctcactatagacatc
agcattgacttggttggagttaaaggctatgggggtgaccagacctactttgatgagata
aagcagttctactacagagatgagttcagtcaccaggtgcaagagtggaataaacagaga
acgctggccatcgaacgttctctccagcacttcctttatcctcagatggccaaggagctg
aagaataaacttgttgctgaggccaaggaaaatatcatcaagtcatgctgcaggaaactg
tataactgtctgaaggtggctccgtatagaccagaccagcaggtggaggaggatgacgac
ctaatggatgacactcaaggcaaaggcatccgtgttttgggagtggcctttgcgtccggc
agagacacacctgtattctgtgctctgatcaacggcgaaggggaggttgttgacttcctc
aggcttccttacttcttaaaaaggaggaatgcatggagggaggaggaacgggagaagaag
cttcaagacattgaaaatttgaagaagttccttctcagtaagaaaccacatgtggtggct
gttgctggtgaaaatcgcgatgctcatatgctgatggaggacatcaagcgcacagtcagt
gagttggagcaagactcgtctctgcccaccgtgggagtcgagctggtggacaacgagtta
gccacactgtatatgaacagcagaaagtctgaggcggactttagggactaccctccactt
cttcgccaggctgtgtccgtggctcgcaagattcaggacccgttggtggagtttgctcag
gtgtgcagcagtgacgaggacatcctgtgccttaaactgcatccgctacaggagcatgtt
gtgaaggaggagctgctcaacgcactttactgcgagtttattaaccgtgtgaacgaagtt
ggagtagatgtgaacagggccattgctcatccttacatgcagagtctggttcagtatgtc
tgtggcttaggaccgagaaaaggctcacatctgctcaagattcttaaacaaaacaacact
cgtttggaaaaccggacgcagttggtcacaatgtgccatatgggacctaaagtgtttatc
aactgtgcgggatttatcaaaatcgacactgcttccctcggagacagcaccgactcctac
attgaggttctagatggctctcgtgttcatcctgagacttacgagtgggctcgtaaaatg
gcggtggacgccctggagtatgatgagtcagcagaagatgcaaatcctgcaggagctttg
gaggagatcctggagaacccagagaggctaaaggacctggatctggatgcatttgctgag
gagttagagagacagggctacggtaataagggaatcacactgtatgacatccgtgctgaa
ctcagctgtaggtataaagacctgcgagccccatacagaccccccaacacagaggaggtc
tttaacctgctcactaaggagacccctgaaaccttctatatcggtaagctaattaccagt
gtcgttactggcatcgctcacagacggcctcaaggggaaagttatgatcaggctattcgt
aatgatgagactggactatggcagtgtcccttttgccagcaggacaactttcctgagctc
agcgaggtctggaatcactttgacagtggctcctgtcctggacaggctattggtgtgaga
actcgtctagataacggtgtcatgggtttcatccccaccaagttcctctcagacaaggtg
gttaagcacccagaggagagggtgaaggttggcatgactgtccactgtcgtatcatgaag
attgacattgagaagttcaacgtggaccttacatgtaggacatctgacctcagtgacaag
aacaacgagtggaagcttcccaaggacacctactatgactttgatgctgaaaccgaggat
gtcaaacatgacgaagagcagaagaagaaacaacaaaggaccacttatatcaagcgtgtc
attgcccacccatcgttccacaacattaacttcaagcaggcggagaagatgatggagaca
atggatcagggtgatgtggtgatcaggccgagcagtaaaggggagaaccacctgactgtc
acgtggaaggtagcagatgggatctaccagcacgtggacatacgggaggagggcaaagaa
aacgccttcagcttgggacacacgctgtggattaataatgaggagtttgaagatcttgat
gaaataacagcccgttatgtgcagcccatggctgcctttgctcgggatcttctcggccac
aagtacttccaagactgcagtggtggagataggaagaaaatggaggagatcctcatcaag
gcaaagaaagagaagcccactttcatcccctactttgtttcggcctgcagagacctacct
ggaaagttcctcctaggataccagcctagagggaagccaaggatagagtatgtgaccatc
actccagatggattcaggtatcgctcccaaatattccccacagtgaatggactcttccga
tggtttaaagaccactaccaggagcccgtgccaggagtaacgcccagcagtagcagcaga
atgcgaacaccagcatctgtgaatgcaactccagccaacattaactttgcagatctaacg
cgggctgtcaacgctcttcccaggaatgtgacgtcacagatgtttaatgctatagcggca
gtaaccgggcagggccagaatcctaatactactccagcacagtgggcctcgagccagtac
ggttacagcggaggcagcagtgcaggaggaggaggcagcagcagcgcttatcatgtgttt
gcaacaccgcagcagcctatggcgacgcccctgatgacacccagctactcgtacactacc
ccaggccaacagcaagccatgagcacaccacagtatccaagcagcacaccgcagtcctcc
cacagccaccaccaacacccttcatccacaccgtcgtcctcctcctcgtcatccagggtt
cggacaccacagccaaaaacaacctctcacactgctgtggattggggtaaaatggctgaa
cagtggctgcaggagaaggaggctgagagacgtaagaaggcaactcgcatgacgccacgg
ccctcaccgagccccatgatcgagagcacacctatgtccatcactggagatgccacacca
ctgctggatgagatggaccgatag
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integrated database retrieval system
