Ictalurus punctatus (channel catfish): 108278761
Help
Entry
108278761 CDS
T04658
Name
(RefSeq) E3 ubiquitin-protein ligase RBBP6 isoform X1
KO
K10624
E3 ubiquitin-protein ligase RBBP6 [EC:
2.3.2.27
]
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ipu04121
]
108278761
Enzymes [BR:
ipu01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
108278761
Ubiquitin system [BR:
ipu04121
]
Ubiquitin ligases (E3)
U-box type E3
108278761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DWNN
zf-CCHC_2
U-box
zf-C3HC4_3
zf-C3HC4_2
zf-CCHC
zf-RING_2
zf-RING_5
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_4
Motif
Other DBs
NCBI-GeneID:
108278761
NCBI-ProteinID:
XP_017347811
UniProt:
A0A2D0SZ52
LinkDB
All DBs
Position
2:11980109..12000812
Genome browser
AA seq
1757 aa
AA seq
DB search
MSCVHYKFSSKLNYDTVTFDGLHITVSELKRQIMGREKLKAADCDLQITNAQTKEEYTDD
GALIPKNSSVIIRRIPIGGVKAASKTFLIDRSEPSVGSSKAIDDSPSISLAQLSKTANLA
EANASEEDKIKAMMSQSNHEYDPIHYTKKPVGPPPPNYTCFRCGKSGHYIRNCPTNGQDK
SFEAPQRIKKSTGIPRSFMMEVDDPNIKGAMLTNTGTYAIPTIDAEAYAIGKKEKPPFVP
QEQSSSSDDEDPVPDELLCLICKDLMADAVVIPCCGNSYCDECIRTTLLESEEHVCPTCN
QSDVSPDALIANKFLRQAVNNFRNETGYTKRIRKASAQSSVPTPQPQPRVQRPVQPLKLL
NSRQQDPLRAHTPPQNPPAAVAPPPAITPPITVTQQSSATPPEVDASPVAVNSSASPTVA
LSPPQQPKQDDVVIPKEPETQPTSVIISDSLLPTPVIPKGHHVPVISQPHVHTLPLPIPR
SGPLRPGAPRLPAPRPAWDPSSGRGRPLLNDRHPRTLVPPVQPPPVAPNLYPPSLFPPPQ
HTLPHLPGVVPPQFPMQFPQGQQLPPPFNMPPPGYPPAPTNVPSPWVPPGTQPPLTNPPV
PPIPAAHLLSKEEFYRQQRRLKEEEKSKLEEFTNDFAKELLEYRKIQKERRRSYSRSKSP
YRSSYSGSSYSYSKSRSRSRSPRSYSRSISRSRSRSRSRSRSRSRSRSYSPYSRRGRGRS
RSYRSRSRTPPYHRSRTRSPSYRGRDGGGVSGGVYRSRSRSPIYRAQSPGKKLPPASQVE
DRKYGGRYREIPPYDAKAYYGRVLDQSDPYERERYREWEREYREWYEKYFKNYEGPQGGQ
IRGRGPGGRDPYSPERFPPHRPRDNSPYGRGRREDYPPHGIPPRNRPLTYQERCAEKYGH
LHVNNMAVGRGINKESLKPTKEREPTTSTAVDSKGLKHKKHRKKRKGEEGDMFSHSDSME
ESKKDERKGDSMLMNSSRDDATPVRDEPMDSASVPYKSASDKEKKDKTKNKTEKVKRKTE
SGTQKKEAPAKSTKPAREKDADSGRERVVPTEPAIKRIKEEPPQKTDGSKPHTSEKLMLP
RKLAQSRPVKQHQEQKAVKDEPKDKKEPVKDSTKVEKPPAKDGKPKLEKPIKADEKPVSK
ASEMKGEKRKRKEEKPLVKESEFMPNKSPRVEVAEIANVSPKPKPKVENEKPMQKEKPAI
PSLMDIKPEPVRKIKLNREIGKRIVSTERLSSEESGAVKNKLDQKSKVKLRRQGHGTDRS
GSTLVDYTSTSSTGGSPIKRHEEKPDLKKTVVKTLEEYTNDSSTPAEDEIVMIQVPRSKW
EKEDFESEEDESKVTNASSGNGNASTANTAALATSLSSDKETSKTLHDFNDVQPEAKPSK
DLSSDKEKDTDWERERDRGKERDRSNSDRDASDRKKPGTLNQDRERVQEKGSDHGSERSS
SSQSSRDRQSDRTASTSRKPSSRENNSSLGDKKQDNRSSTKDHTDFRQRDTKSREQLRKK
DSPSPPSKMPTDTTKRVPIASQESRMSEYSPSAERKVLSRESKRASSEDSKADKAVHREG
TRHSDNRIAKDKEQHKVNQSTTLIEPRSDAERSDARIKPPSTRSMRLSSDLTRETDEAAF
VPDYSESDSDASDPDNKAEPKEKGQESSVSPVHSRSASPTGSHANSSSPSSPGSQDSKKK
KKDKKDKKEKKKHKKHKKHKKHKKHIGNESESDAKGQKHKHKKKKSKKNKDKDKEEKDKD
KEEKDNRTKDGQNEAPV
NT seq
5274 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgtgttcattacaagttttcctctaaacttaactacgacacggtgactttcgac
gggctgcacatcaccgtgagcgagttgaagcgccagatcatgggccgggagaagctgaag
gccgcagactgcgacctccagattaccaacgcccagactaaagaagaatacactgatgat
ggcgctctaatccccaaaaactcatctgtcatcatcaggcgtataccaatcggtggtgta
aaggcagccagcaaaacatttcttattgatcgatctgaaccatcagttggatcttcaaaa
gccattgatgattctccctccatttctctggcccagctctctaagacggcgaatcttgca
gaggcgaacgcctcggaagaagacaaaatcaaagcaatgatgtcacagtccaatcacgaa
tacgaccccattcattacacaaagaagccggtgggtcctcctcctccaaattacacctgc
tttcgctgtgggaaaagtggacactacatccgaaactgcccgaccaatgggcaggataaa
agttttgaggcgcctcagcggataaaaaagagcacagggattcctcgcagcttcatgatg
gaagtggacgatccaaatattaaaggcgccatgctaaccaacactggcacttatgccatt
cccaccattgacgctgaagcttatgcaattggaaagaaggagaagccaccctttgtccct
caggaacagtcatcctcctctgatgatgaagatcctgttccagatgagctgctctgtctg
atctgtaaagacctcatggctgatgccgttgtgattccctgctgcggaaacagttactgt
gatgaatgtattcgaacaactttgttggagtcagaggaacacgtttgtcccacctgcaac
cagtctgatgtttcacctgatgctttaattgccaacaaattcctacgtcaagctgtgaac
aacttcaggaatgaaaccggctacaccaagagaattcgcaaagcttctgctcagagttct
gtccccacaccccagcctcaaccccgcgtccagcgccctgttcagcccctcaaacttcta
aattcccgccagcaggatccgctacgcgctcacacgccaccccagaacccacctgctgcc
gtagccccaccccctgccattacgccacccattactgtcactcagcagtcttcagcgacg
cctcctgaggttgatgcttcacctgtggccgtgaacagtagtgcctcccccacagtggct
ctttctccaccacagcagcccaagcaagatgatgttgtcatacctaaagagccagaaaca
cagccaacatctgtgataatatctgacagtctgcttcctactccagttataccaaaaggg
caccacgttccagtgatcagccagccacatgtgcacacacttcctctccccattcccaga
tcaggaccgttgaggcctggcgccccaagactgccagcaccccggcctgcatgggatccg
tcctcaggccgaggccggcccctccttaatgatcggcacccaaggacactagttcctcca
gtccaacctcctcctgttgctccaaacctttaccctccctctctgttccctccccctcag
catactttgccccacctgcctggtgttgtgcctccacagttcccaatgcagttccctcag
gggcaacaactccccccccctttcaacatgcctcccccaggttaccctcctgccccaaca
aatgtacccagtccctgggttccgccaggtactcagcccccactcacaaaccctccagta
cccccaataccagcagcacacttactgtccaaggaggagttctatagacagcagcgtcga
ctgaaggaagaggagaagtccaaacttgaagagtttaccaatgactttgccaaagagttg
ttggagtacagaaagatccagaaggagaggaggcggtcctattccaggtcaaagtctcca
tatcgatcctcctacagtggctcatcctactcttactcaaagtccagatcccgttctcga
tctccacgttcttattcacgctccatatcacgatctcgctctagatcgcgttcccgttct
cgttcccgatcccgttctcgttcctactctccatactcccgaagaggcagaggtcgtagc
cgcagttatcgttctagatcacgcacacccccataccatcgctcccgaacacgctctcct
tcctatagagggcgggatggaggaggagtaagtggaggtgtctatcgatctcgctctagg
tcaccaatctatagggcccaaagtcctggcaagaaactgcctccagcttctcaggtagag
gaccgcaaatatggcggaaggtacagagagattcctccatatgatgccaaagcttactat
ggccgagtgcttgatcaaagcgatccttatgaaagggaacggtatcgcgagtgggagaga
gagtacagagagtggtatgagaagtatttcaagaattacgaggggccacaaggtggtcag
atcagaggccgtggtccaggtggacgagatccatattctccagagcgtttcccacctcac
agacctagagacaactcgccgtatggcaggggtcgccgggaggactatccaccccatggc
atcccaccaagaaatcgtccattgacttatcaggaaaggtgtgcagaaaagtacggccat
cttcatgtcaacaatatggcagttggaagagggataaacaaagaaagcctgaaacccacc
aaagagcgagagccaaccacaagcactgctgtggactctaagggcctgaaacacaagaaa
cataggaaaaaaaggaaaggggaggagggagacatgtttagccattctgactcaatggaa
gaatctaagaaagatgaacgtaagggagactcgatgctgatgaactcgagtcgtgatgat
gccacaccagtcagggatgagcccatggatagtgcctctgtgccctacaagagtgcttca
gacaaggagaaaaaagataaaaccaaaaacaagaccgaaaaagttaaacgcaagactgag
agtggtacacaaaagaaagaagctccggcaaaaagcaccaagcctgccagagaaaaggat
gcagattcagggcgggaaagagttgttcccactgaaccagccattaaaaggatcaaagaa
gagcctcctcagaagactgatggaagtaaaccacatacttctgagaaactcatgcttcct
cgcaaattggcccaatctagaccggtcaaacaacaccaagagcaaaaagcagtcaaagat
gaacctaaagataaaaaagaaccagtcaaagactctacaaaagttgagaaacctcctgct
aaagatggaaagcccaagttggaaaagcccatcaaagctgatgagaaacctgtcagcaaa
gcaagtgagatgaagggggaaaaaaggaaacgaaaagaggaaaagccacttgtgaaggag
tcagagtttatgcccaacaaatctccaagggtggaagttgctgagattgccaacgtctcg
cccaagcccaagccgaaggtggagaatgagaagccgatgcagaaggagaagcctgccatt
ccttctctgatggatattaaacctgaacctgttagaaagatcaaactcaatcgtgagatt
ggaaagaggattgtgagtactgagcggctttcttcagaagaatctggtgctgtaaagaac
aaactagaccagaagtcaaaggtcaagctacgacgacaggggcatggcacagaccgatct
ggatccacattggttgattacaccagcaccagctcgactggcggtagtcccatcaaaagg
catgaggagaaaccagacctgaagaagactgtagtgaaaacgctggaggaatacaccaat
gatagctcaacacctgctgaggatgaaatagtcatgatccaggtacctcgctccaaatgg
gagaaggaagactttgaatctgaggaagatgaatccaaggtcacgaatgcctcttctgga
aatggaaatgcttccactgctaatacggctgctcttgctacttcactatctagcgacaag
gagactagtaaaacactccatgactttaatgatgttcaacctgaggctaaaccttccaag
gatctgtcaagtgataaggagaaagacactgattgggaaagggagcgtgatagaggcaaa
gaacgagacagaagcaactctgatcgtgatgcctcagacagaaagaaacctggtacgtta
aatcaggaccgggagcgagtacaggagaaaggaagtgaccatggaagcgagagaagctcc
tcatctcaatcttccagagacagacagagtgataggactgcatcaacatccaggaagcca
tcaagtagggaaaacaattcaagtcttggtgacaagaaacaggacaaccgcagcagcaca
aaagaccacacagattttcgtcagagagacacgaaatcaagagaacagctcaggaagaaa
gactcaccatctccaccttcaaaaatgccaacagacaccactaaaagggtgcctattgct
tcccaggagtccaggatgtctgaatatagtccttctgcagagaggaaagtattgtctcgg
gagtccaaaagggcttcctctgaggactctaaagcagacaaggcagtacacagagaagga
acaaggcactctgataatcggatcgcaaaggacaaggagcaacacaaagtgaaccaaagc
accacattgatagagcccaggagtgacgctgagagaagtgatgctcgaataaagcctcct
tccacccgttccatgcgtttgtcctcagacttgacacgggagacagatgaggctgccttt
gtcccagactacagcgagagtgacagcgacgcatcagatccagataacaaggcggagcca
aaggaaaagggacaggaaagcagtgtaagtcctgtccacagtaggagtgcaagccccact
ggaagtcatgctaacagcagcagcccaagctcaccaggtagtcaggacagcaagaaaaag
aagaaagataagaaggataagaaggagaagaagaagcacaaaaagcacaagaaacacaaa
aaacacaagaagcatataggcaacgaatcggagtctgatgccaagggacaaaaacacaag
cataagaaaaagaaatcaaaaaagaataaggacaaagacaaggaggagaaagacaaagat
aaagaggagaaagacaacaggacgaaggatggacaaaacgaagcacctgtttaa
DBGET
integrated database retrieval system
