Ictalurus punctatus (channel catfish): 108278769
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Entry
108278769 CDS
T04658
Symbol
nxf1b
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03008
Ribosome biogenesis in eukaryotes
ipu03013
Nucleocytoplasmic transport
ipu03015
mRNA surveillance pathway
ipu05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108278769 (nxf1b)
03015 mRNA surveillance pathway
108278769 (nxf1b)
03008 Ribosome biogenesis in eukaryotes
108278769 (nxf1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
108278769 (nxf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108278769 (nxf1b)
03009 Ribosome biogenesis [BR:
ipu03009
]
108278769 (nxf1b)
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108278769 (nxf1b)
mRNA cycle factors
Stress granule specific factors
108278769 (nxf1b)
Ribosome biogenesis [BR:
ipu03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
108278769 (nxf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
UBA_8
LRR_8
LRR_4
LRR_9
LRR_6
Motif
Other DBs
NCBI-GeneID:
108278769
NCBI-ProteinID:
XP_017347819
Ensembl:
ENSIPUG00000020856
UniProt:
A0A2D0SYR3
LinkDB
All DBs
Position
18:complement(12714908..12730666)
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AA seq
634 aa
AA seq
DB search
MATADDSRFYSEHDDRVGPKHRRKGRGPFRAPLYSDQISKQRHRGGHGGGGGGAGPRSRF
EDDDGDIAMTDDLHDGGSQRRFAPYGRPQNRRNGRRGGKDARGDGGNNRGRGNRGGGGGS
ADGVDGGGGRKNWFKMMIPHGKKYEKQWLLSSLQNICAVPFQAIQYHTEGNRVQFYIDDS
STAYALVKVSRKITDKDGYKIAVLMNPCQPPSLPQQDLKLEDLEHLKQCMSKRFDGSQQA
LDLNNIRVDPDLASLNIEVALSRKNSMQAVIKIIEDNIPELVCLNLSNNRLYKLDDLADL
VAKVPNLKILNLSHNDIRSERELDKLKGLRLVELSLQRNPLCDHFKDQADYISAIRERFP
RLLKLDGHDLPPPIGFDLEVAPAVLPPCKPSYFGSEELKGLITCFLQQYYTIYDSANRQL
LLDAYHDGATFSLIVPFSTQNPSRSSLGEYMKDSRNIKRVKDSTTRFRLLKHTRLNVVAF
LNELPKTQHDIASFNVDVNTYTGSLLSFTVSGVFKEVDGTSRDSYRAFSRVFIAVSPGNG
SMCIVNDEMFVRNATTEEIRRAFVAPAPTPSSSPVPTLSATQQEMLSAFSQQSGMNLEWS
QKCLQDNDWNFERAGQIFTDLKVQGKIPDIAFIK
NT seq
1905 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagcagacgactctcgattctacagtgaacatgatgatcgtgttggacccaaa
catcgtaggaaaggcaggggacctttcagagcgccgctctacagcgaccagatctcgaaa
cagagacatcgtggaggccacggaggcggaggtggaggagctggtcccagatccagattt
gaggacgatgatggtgacatcgcaatgactgatgaccttcatgacggggggtcgcaacgg
agatttgctccttatgggcggccccaaaatcgccgtaacggccgaagaggaggaaaagat
gcaagaggagatggtggcaacaacaggggacgagggaataggggaggtggaggaggcagt
gcagacggagttgacggaggtggaggccgtaaaaattggttcaagatgatgattcctcat
gggaaaaaatacgaaaaacagtggcttctgtcttcactacagaacatctgtgcagtgcca
ttccaagccatacagtaccacacagaaggaaacagagtacagttctacattgacgattct
tctacagcgtatgctttggtcaaagtgtccagaaaaatcacagacaaagatggatacaag
atagctgtcttgatgaatccatgccagcctccaagcttaccccaacaggacctgaagcta
gaggacctagagcatttgaagcaatgcatgtccaagcgttttgacggttcacaacaggcc
cttgatttgaacaacatcagagttgacccagatttggcttccttgaacattgaggtggca
cttagcaggaaaaattccatgcaggcagtcatcaagatcattgaggataatatccctgag
ctggtttgtttaaacctaagcaacaacagattgtacaagcttgatgacctcgctgacctc
gtcgccaaagtcccaaatctgaagattctgaatctctcgcacaatgatataaggtcggag
agagagttggacaagctgaaggggctgaggctggtggagttgtcattgcagaggaaccct
ctgtgcgatcactttaaggaccaggccgattacattagtgccatacgggagcggttcccc
agactgctcaaactggacggacacgaccttcctccccccattggttttgacctggaggtt
gctccggctgttcttccaccgtgcaagcccagttactttggctcagaagaactgaagggc
ctcatcacttgcttcctgcaacagtattacactatatacgactcggcgaacagacagctt
ctgcttgatgcttatcacgatggcgcaacgttctcgctcattgtcccgttctccacgcag
aacccttccagaagcagcctgggagagtacatgaaggacagtcgtaacatcaagcgtgtg
aaagattccactacaaggtttcgcttgctgaagcacacacggttgaacgtggtcgcattt
ctgaacgagctccccaagacccagcacgacattgcctcgtttaatgtcgacgtcaacacc
tacaccggctcgttgctgtcattcacagtcagtggagtgtttaaagaagtggatggcacc
tctcgtgactcgtacagagctttctctcgcgtgttcattgctgtgtcccctggaaatgga
agcatgtgtatcgtgaatgacgagatgtttgtccggaacgccacgaccgaagagattcgg
cgagcgtttgtcgccccagccccgaccccttccagcagccctgtgcccacgctgtctgcc
acccaacaggaaatgctctctgcgttctcccagcagtctggcatgaacctggagtggtct
cagaagtgcctccaagacaacgactggaattttgaacgggccggtcagattttcacagac
cttaaggtccaaggaaagatcccagatatcgctttcataaagtga
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