Ictalurus punctatus (channel catfish): 108278828
Help
Entry
108278828 CDS
T04658
Name
(RefSeq) BRCA1-A complex subunit RAP80 isoform X1
KO
K20775
BRCA1-A complex subunit RAP80
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108278828
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ipu03400
]
108278828
DNA repair and recombination proteins [BR:
ipu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-A complex
108278828
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RAP80_UIM
CEP104_ZnF
Motif
Other DBs
NCBI-GeneID:
108278828
NCBI-ProteinID:
XP_017347938
Ensembl:
ENSIPUG00000006845
UniProt:
A0A2D0SZ33
LinkDB
All DBs
Position
18:complement(22626254..22638396)
Genome browser
AA seq
960 aa
AA seq
DB search
MPRRKRTTGQNERRRKVRRRDDDDDDDNDNDEEDEDNDTLVISDSGSDEEYIYNKEEDCA
FKVTPRTVRRLEREKKTHVQDMTEDEMLDLALRLSKQEASTATQREQVDDDNMRKAIAES
LQVSCSQASETSSVRVRSAAKPHHDRDTVTARVRCKLSFPSKDGKDGGSDDNDGDVPAAR
TSALTGSEEVRPLPPMPDLSQRTSSQPSPPSPSLPSVPSAASQESHSSCPVKQEFNARSP
EDERSQSDSPLKRSPVYLRRCVVRLSQNPPSRSESPRNIPCTNNSSVDLTSPDRSQNGPP
PPKSPVFNRIDSKRCTKLTRDEFSDRTPCTSFTDSVCKPEDASRESSSHKSQDSPKRLPG
SRKAQPPSHVSVPEGDEQPREVVKVKDEPSRGTGLSTVSDGAPNLDVSSLADAKSLEEFT
SHMVLHLSDEDEEEEEENEKIIPPSPVFPQDRASRAGQPKLSPTQPCCSPPTAITTQDSF
QTKSPSQAESEQTKVSRKSTECRLTPPVEGKEDSLVSYYWGVPFCPKGQSPDDYTRVILA
QLEVYEKSLKEAQRQLLRKADWGLPVFPCPVEKSHGRRLKRHRAPLLLEEEEEDEDEDKG
RDEEEKAKKKKVERKEREESQPCSEDGAKDSQHETYFVLSSPETQEELGQRSPPLFGKKE
STTSAKASSCRKPISQDLSEDTRRQSEPDERGEDVQNGSFDVERAVCPETQMTEDETPEL
MVTSPAQPQLQAESDVMEVDEVTDPPAEAEERMEQERPGEEQSWMASVPSHVECPMCTRL
FSLGKIEMHAAYCNGTSEDQDQQDNFSQGSSRRKSVRRTATEDDVRSEKSEQREKCFLCN
KLFTSKEYSHHVDQCLQHKTPGSKQGNGLLSALNRTETVHLDDSGAGPSNTTSRNNRGLA
DTSVTPGDGVDSQAPGYYVSSSPIKSFTPISEITDCLINFRQQNSDRTRHRLERKRKFKR
NT seq
2883 nt
NT seq
+upstream
nt +downstream
nt
atgcctcggagaaaaaggaccacgggtcaaaatgaaagacgcagaaaagttcgtcgcaga
gatgatgatgatgatgatgataatgataacgacgaggaagacgaggacaacgacacgctg
gtcatctccgactcgggaagtgatgaagagtatatatacaacaaggaagaagactgtgcc
tttaaagtgacaccaagaacagtacggcgcctagagagagaaaagaagacacacgtgcaa
gacatgactgaggatgagatgttggatctggctttgagactgagtaaacaagaggcgagc
actgcgacccagagagaacaagtagacgatgacaacatgaggaaagccatcgcagaaagt
cttcaggtcagctgcagtcaagcttcagaaacgagctccgtgcgagtcaggtctgctgcg
aagcctcaccacgaccgagacactgtgacggcacgcgttcggtgtaagctctcctttccc
agcaaagatgggaaggatggcgggagcgacgacaacgacggcgacgttccggccgcacga
acgagtgctttgacaggttcggaggaggtccgtccgctaccgccgatgcccgatctttct
cagaggacctcatcgcaaccttcacctccgagtccgtcccttccgtctgtgccttctgca
gcttctcaagaatcccactcctcatgtccagttaaacaggaatttaacgcacgctccccc
gaggacgagcgttcacagagcgactctccgctcaagaggtcgcccgtctacctccgtcgt
tgcgtagtaagactgagccagaacccgccgagccgcagcgaatccccaaggaacatcccg
tgtacaaacaacagctctgtcgacttaaccagtcctgacagatcccaaaacggcccacct
cctcccaaaagccctgtttttaataggattgactctaaaagatgcactaaattaacacgg
gatgaatttagcgatcgcactccctgcaccagctttacagacagcgtatgcaaacccgaa
gacgcgtctcgagaatcttcaagccataaaagccaagattccccaaaacgccttccaggc
agcaggaaagctcagcctccgtcacacgtttcagtgcctgaaggtgacgaacagccacgg
gaagttgttaaggtgaaggatgaaccctctcggggaaccggcttaagcactgtgtcagac
ggagcaccaaacttggacgtgtcttcacttgctgatgccaaatctttggaagagttcacc
agtcacatggtccttcatttgtctgatgaagatgaggaggaggaggaagaaaacgaaaag
ataattcctccaagcccagtcttccctcaggaccgcgcttcacgcgcaggccagccaaag
ctctcgccaacgcaaccctgctgctccccacctacggccatcaccacgcaggactcattt
cagaccaaatccccttcccaagccgagtccgagcagacaaaagtttctagaaagtccacc
gaatgtagactcacgccgccggtggaagggaaagaggacagtcttgtatcgtactactgg
ggcgtgccgttctgccccaagggccaaagcccggatgattacacgcgagtcatcctcgcc
cagctggaggtgtacgagaagagcctgaaagaggcccagagacagctcctgcgcaaagct
gactggggtcttccagtgttcccgtgcccggtagagaaatcacatggcaggagactgaag
cgccatcgagcccctctccttctggaggaggaagaggaggatgaggacgaagataagggg
cgagacgaagaagaaaaagcgaaaaagaaaaaagtggagcggaaggagagggaagagtct
caaccttgttcggaagacggagcgaaggacagtcagcacgaaacatacttcgtcttgtcc
tctcctgagactcaggaggagcttggacagagatcaccacctctgtttgggaaaaaggag
tccacaacctcagccaaagcttccagttgtaggaagcccatttctcaggacctttctgaa
gacactcggagacaatctgagcccgatgagcgtggagaagacgttcagaacggaagtttt
gacgtggagagagctgtgtgtccagaaacccagatgaccgaagatgagaccccagagctg
atggtgaccagtcctgcacagccgcagttgcaggcagagtccgatgtcatggaggtggac
gaagtgacggatccaccagctgaagctgaggagaggatggagcaggagcgtccaggtgag
gagcagtcgtggatggcgtccgttccctctcatgtagaatgtcccatgtgcactcgcctc
ttctctctcggtaagatcgagatgcatgcggcctactgtaacggcacttcggaggaccag
gaccagcaggacaacttttcacaagggagttctcgacggaagagcgtgagaagaactgcg
acggaagacgacgtgaggtctgagaaatcagagcagcgagagaaatgcttcttgtgtaat
aagttgttcacgagcaaggagtacagccatcatgtggaccagtgcctgcaacacaaaacc
cccggatcaaagcagggaaacggcttgctgtctgccttgaatcggacagaaacggtgcac
ctggatgacagcggagctggaccatctaataccacaagcagaaacaatcgcggcctcgcg
gacacgtccgtgacgcctggcgacggcgtggattctcaagctccgggttattacgtcagc
tcgtctcccatcaaatccttcactcccatatcggaaatcacggactgcctcataaacttc
cggcagcagaactcggacaggaccaggcacagactcgagaggaagaggaaatttaagaga
tag
DBGET
integrated database retrieval system
