Ictalurus punctatus (channel catfish): 108278867
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Entry
108278867 CDS
T04658
Symbol
rin1a
Name
(RefSeq) ras and Rab interactor 2 isoform X1
KO
K17638
Ras and Rab interactor 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ipu04131
]
108278867 (rin1a)
Membrane trafficking [BR:
ipu04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
108278867 (rin1a)
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Gene cluster
GFIT
Motif
Pfam:
RIN1
VPS9
SH2
SH2_1
Motif
Other DBs
NCBI-GeneID:
108278867
NCBI-ProteinID:
XP_017348026
Ensembl:
ENSIPUG00000021234
UniProt:
A0A2D0SZR9
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All DBs
Position
18:complement(13276552..13286192)
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AA seq
819 aa
AA seq
DB search
MQEGHVYDYPDAHPVGEKRTCPQRGSLKSISVLDRLLLTYPVWLQLSINSATALHILQRE
PPGTFLVRKSNTSQKKMLCLRLTDDSVPSFVKQFVIREKDSTFSLESSAISFPDLCRLIA
FYCVSRDVLPFTLELPEAIARASSHKQLESISHMGVEFWSSQLNFRGPRNGPPPVHDAPV
LSNPKSQHSTTSSSTSETLFQEFCPIHTRSPSELDLGAGQGALCFINPLFLQEHPNRGAM
HKRHHFKHSIKVRVSTENSSLLSPPITPPPPPPLLAKAKSKGKNVKQTQVVQTNEEDKNN
AEFVEGDSDYLQPCLALLKKASAIVTPNLSPTAEEEDYQLPKALLQAQRKITVESEEENE
DEDIGLVLEKRKAPSLTELDSSSSLSSLDETEESPQRPSLTRGTSNPIIPSPHPPHQSVS
ALQKMSAAFVSFFVPGKRVIRLVEDLSHDRRIAFGALVQDFLREQREALKPQCLTTTLEL
LQGLRLFIDQAKVFLLECGELEPPIETLVPEDEKDQTLEKALFRCVLKPLKGQIDTALYN
MHEHDGSFKRLAESMKRARDASPRDLFGVQVAVPDAHGIEKIKHKMSLMRRAYSPIDKVV
LLLQICKLIYKAMKTNTGQKFGADEFLPALSYVIVQCNIPELSLEVEYMMELLETSWLTG
EGGYYLTSVYASLTYIQSEPEAVASSGLTHQVKESLKEWSHRRSTESKSQNDIKQRFVKV
LFQDGECSLVKTLQWKAGISGEALGQLCAIKFGVDQPDEYGLYWRRSEKLIPVPLDAQIQ
DLQNMGTSSAPLIYQHSNPDMKSNRLTRGGALDLSGEAS
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagggccatgtgtatgactatccagatgcccatccagtaggagagaagaggaca
tgtcctcagagaggctccttgaagagcatcagtgtgctggaccgcctgctgctcacatac
cccgtatggctgcagttgtccatcaactcagccacagcacttcacatcctacagcgtgaa
cccccagggactttcctggtgcgaaagtccaatacatcccagaagaaaatgctgtgtctc
aggctaacagatgacagtgtgccatcttttgtcaaacagtttgtcatccgagagaaggac
tcaaccttctctttggagagctcagccatcagcttcccagatctttgtagactcattgcc
ttctactgtgtcagccgggatgttcttcccttcactctcgaattgccagaggccatagcc
agggcttcatcccacaaacagttggaatctatctctcatatgggtgtggagttctggagt
tcccagttaaacttccgtgggcctcggaatggtcctccaccagtacatgatgcacctgta
ctctcaaatcctaaatcacaacactctaccacatcttctagcaccagtgaaacattgttc
caggagttctgcccaattcacaccagaagtccttctgaacttgatttgggagcagggcag
ggagcattatgcttcataaacccactattcctacaagagcatcccaatcgtggtgccatg
cacaagcgccatcactttaaacacagtataaaggttcgcgtctccaccgaaaactccagt
ttactctcaccccccatcaccccaccaccacctccaccactacttgcaaaagccaagagt
aaaggaaagaatgtgaagcaaactcaagtggttcagaccaacgaggaggataagaacaat
gctgaatttgttgagggagattcagattacctacagccttgtcttgctctcctgaaaaag
gcttcagcaatagtcaccccgaacctctctcctacagctgaggaggaggactatcagttg
cccaaagcacttctgcaggcacaaagaaaaatcacagtggagagtgaagaggaaaatgag
gatgaagacatcggactagtacttgagaaaagaaaggcaccatccctcaccgagttggac
agcagcagctcccttagcagccttgatgaaactgaggagagtcctcagaggccttccctc
acacggggcactagtaaccctatcatcccctctcctcatcctccccaccagtctgtttca
gctctgcaaaagatgagcgcagcctttgtgtccttctttgtgccagggaagagagtcata
cggctggtggaagacctttctcatgacaggcgtatagcatttggggctctggtacaggac
ttcttgagggagcaaagggaagcactgaagccacagtgcctaacaaccactttggagctg
ctgcaaggtttgcgtctctttattgaccaggctaaggtgttcctcttggaatgtggagag
cttgagccccccattgagaccctagtgcccgaggatgagaaagatcagacactggaaaaa
gccctgttccgctgtgtactaaaacctctaaaagggcagattgatacagcactctataat
atgcatgaacatgatggctcctttaagaggctggctgaaagtatgaagagagccagagat
gcttcaccacgagacctttttggcgttcaggttgctgtgcctgatgctcatggcattgag
aagataaagcacaagatgtctctcatgagacgtgcctattcaccaattgacaaagtagtt
ttgctcctgcagatctgtaagctcatctataaagccatgaagaccaatactgggcagaaa
tttggagctgatgaattccttccagctctttcctatgtgattgttcagtgcaacatacct
gagctttctctagaggtggagtacatgatggagctgctagaaacctcttggctcacagga
gagggtggatactatctgaccagcgtttatgccagccttacctatatacagagtgagcca
gaagctgtggcttccagtggacttacccaccaagtcaaggaatccctgaaggagtggagc
caccgtcgtagcactgaatccaagagccagaatgacataaaacagaggtttgtaaaggtg
ctgttccaggatggtgaatgtagtttggtgaagacattgcaatggaaggcagggatcagt
ggagaagctttgggacagctctgcgccataaaatttggagtggaccagccagacgagtat
ggcctgtactggagaagaagtgaaaagttaataccagttcctctggatgctcaaattcag
gacctgcagaacatgggtaccagcagtgctccactcatttaccagcactccaatccagat
atgaaatccaataggttgaccagaggaggcgctttggacctttcaggggaagcctcgtaa
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