Ictalurus punctatus (channel catfish): 108279002
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Entry
108279002 CDS
T04658
Name
(RefSeq) nuclear pore complex protein Nup98-Nup96 isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108279002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ipu03019
]
108279002
03036 Chromosome and associated proteins [BR:
ipu03036
]
108279002
Messenger RNA biogenesis [BR:
ipu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108279002
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
108279002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Nup98_GLEBS
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
108279002
NCBI-ProteinID:
XP_017348356
Ensembl:
ENSIPUG00000008976
UniProt:
A0A2D0T0P7
LinkDB
All DBs
Position
18:23545140..23561337
Genome browser
AA seq
1806 aa
AA seq
DB search
MFNKSFGAPFGGGTGGFGASSTFGQQNTAFGTTGGFGASAFGTTNNTGGLFGAAQNKPAG
LFGSSTFSQPVTSSTSSGFGFNATSGGTSNSLFGSTNTGSGGLFSQPGNAFSANKPASFG
TFGTSTSSGGLFGTTNTTSNPFGGTSSLFGSSGFTATQPGTTIKFSPPTGSDTMVKSGVT
TSINTKHQCITAMKEYENKSLEELRLEDYQAGRKGPSNPMAANAGGLFGAAATPTPSTAT
GLFGSSGTGFSFNQPKPSFSASAGGFGPTPGGLFGQSSQANSLFKPFGQTTTTQNTGFSF
GATNTMGSANTSSMGLFGNTAASQTGGLFGNTANTSTATGFGTSTGLFGQPNAGFGNVGT
QNLFGNKPAGFGTTTTSAPSFGTGTGLFGNKPTLTLGPNTNTSTFGFGANPPGVSLFGNK
PATGTLGSGLGTGFGAGTGQTSLFGNNQNKISSTLGTVGTFGGTNFNTGTSMLNFGAPQQ
PVALTDPNAAAQQAALQQQLNALNYSPFGDSPLFRNPLSDPKKKEERLKPTNPAAQKALT
TPTHYKLTPRPATRVRPKALTSSGSGKSQLFDGLDDDEPSLTNGAFMPRRSIKKLVLKNL
NGSSLYSSPLNREADDLNSPSEYPQNGLSLRADAEETHDVDGGAEDDLQVSRFYTNPVAK
PIPHTQPSPSMQDTISELNMRRSAGVRKDLDLSSEEISLGDESVQEERDEELEAQKPPHP
AGIVLTRVGYYTIPSMEELGKMLNENGECIVENFTVGRKGYGSVFFPGEVNLTDLNLDEI
VHLRRKEVIVYPDDKDKPSVGEGLNRRAEVTLDGVWPNDKTTCTQIKSPQRLSEMNYEER
LENVSRKQGARFLEYRPETGSWVFEVAHFSKYGLQDSDEDEDIPPAKTEAKKMKTAVPAG
LQQIPLSQQQQQMAPQAQSKAVLELLSRVSELDSDMADITQEPPADGVLCDEDDCVLEDD
TRMALRAATPAEPEPISASSQIASSLGINPHTLQIMKASLFVGEDDCDLFHEQFPTKFSE
EVSSPSRLLLGKSQARLSVGGLLQSKFTSAGGLFSQLPELPFGGSPQKLSKSAVPEASWP
SLGTSIVLPPPAPELMPRTVGARRLCGPVPLENSVTVGKGRLLMDAALYMGRSFRVGWGP
NWTLVHCGNQLSTPAESKDQNKDAMGFGFLPRPSKNRQIAESPFKVHVEQVVGMEPKVTA
ESLAMYHQPLEIGLEHSTFSTDDACPFVQPEKGVNALHEYAKWIVEVLKKGGAGDAVLGH
WQQVWTLCEALWGRLGDRDSEPEVGGGYQDRHARRHSFSRWLSESAAQRIQEEVCRNQTR
CHVDAIFSYLTGHCISEACRLAQKNGDHRLSLLLSQAAGSQFSRDLLALQLADWNRMQTD
SFIQEERLHIFALLAGKPVWETTDCCINVCSELDWKRCLAVHLWYMLPPTASVADSLAKY
EAAFQGSEDGRKYACAPLPPYMDDVEQEAVEEMEETESTKALYDICFHLLKLYSDKHYSL
HQLLDPTTVTADQLDYRLSWHLWNVLQALNYTHLSLPRQSLLHTSYAAQLESAGLWEMAV
FVLLHIPDSLLRERAVREILNQHCALEETDESAEKERFLTDKLLIPMQWIHEAKATRARR
DGDQHREALHLFRAGHWNRCHRLIIQNLASDCIVNDNHEYLKEFLEGLAVPELSVQIQDW
DTSGRVYLDYIRVIQSLKTIQKADSPGFQLERLHNNVTSLCSRIELLPCFKAKDRLAQSE
MAKRLANILRAVLSLQQGGEGAPDPRRIPLCHLAPHIGRLPMPEDYALEELRSLTQSYLR
EYVVSH
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atgttcaacaagtctttcggtgctcccttcgggggaggaacaggaggatttggggcttca
tctacgttcgggcaacagaacacagcgtttggaactacaggtggttttggtgcttctgct
tttggaaccacaaacaacaccggtggtctcttcggggcagcacagaacaaacctgctggg
cttttcggctccagcactttcagtcagcccgtcacgtcatctacgagcagtggatttggt
ttcaacgctacaagcggcggtacctcgaacagcctctttggcagtactaatacaggaagc
ggaggccttttctctcagccaggcaatgcattcagtgccaataaacctgcctcttttggt
acttttggcacaagtaccagcagcggagggttgtttgggacgaccaacaccacctccaat
ccattcggaggaacctcatctctgttcggatcctcaggctttactgctacccagcctggc
acaaccatcaaatttagtccaccaacaggaagtgacacaatggtaaagagcggtgtgacg
accagcatcaacaccaagcaccagtgcatcacagccatgaaggagtatgaaaacaaatct
ctagaggagctaaggttggaggattaccaggcagggaggaagggaccctccaacccaatg
gcagccaatgcaggcggcctgttcggggctgccgccaccccgactcccagcactgctacc
ggcctcttcggctcctcgggtaccggcttcagcttcaaccagcccaagccctccttcagt
gctagtgcaggtggcttcgggccgactccaggtggtttatttggccagtcgtcacaggct
aatagtctcttcaagcccttcggtcagaccaccaccacccaaaacacgggcttctcgttc
ggtgccaccaacaccatgggctcggccaataccagcagcatgggtctgtttgggaacacg
gctgcctcgcagaccgggggtctgtttggaaacacggccaacaccagtacggccactggc
ttcggcaccagcaccggactcttcgggcagcccaacgctggctttgggaatgtgggtaca
cagaatctgtttggtaataagcctgctggttttggcaccaccaccaccagcgctccctcc
tttggaacaggcacaggcctgtttggcaacaaacccacactcaccttggggccaaacaca
aacacctccacctttgggttcggagccaatcctcccggagtaagtctgtttggaaacaaa
cctgccaccggtacactaggatctggactcgggacaggtttcggagcaggtacaggccaa
acgtctctgtttggaaataaccagaacaagatcagctccactctggggacagtggggacg
ttcggcggtactaacttcaacacaggaaccagcatgttgaacttcggcgcaccgcagcaa
cctgtcgcactgacggatcccaacgctgcagcgcagcaagcagcgcttcagcagcagctc
aacgcgcttaactactcgcctttcggggattcgcccctttttagaaatccgctctccgac
cccaagaagaaagaggagcgcctgaagcctacaaatccagctgcccagaaagccctgaca
acccctacgcactacaagctcacccctcgtcctgccacacgtgtgcgtcccaaagccctc
acctcatcaggttctgggaaatctcagcttttcgacgggctagacgatgatgaaccttct
ctcaccaacggagcttttatgcccaggagaagcatcaagaaactcgtgttaaagaacttg
aatggaagcagtctgtacagcagcccactgaacagggaggcagacgacttgaactcgccg
tcggaatacccacagaacggcctcagtctgagagcagacgcagaggaaacccatgacgtg
gacggaggagccgaggacgatctgcaagtctccaggttttacaccaaccccgttgctaag
cccatcccacacacgcagcccagtccttcgatgcaagacacgatcagcgagctgaacatg
aggagatccgccggtgtccgcaaagacctggacctcagcagcgaggagatctctttggga
gacgagagcgttcaggaagagagagacgaggagctggaggcacagaaacctcctcaccca
gccggtatcgttctcactcgggtcggctactacaccatcccgtccatggaggagctgggg
aagatgctgaatgaaaacggggagtgtattgtcgagaacttcacagtcggaaggaaaggc
tacgggtctgttttcttccctggtgaagtgaatctgaccgatctgaatctcgacgaaatc
gtgcacttgagacggaaggaagtgatcgtctaccccgatgacaaagataagccttctgta
ggagagggcctgaacagacgagcagaagtgaccctcgacggcgtttggccgaacgacaaa
accacctgcactcagatcaaaagtccccagcgtctgagcgagatgaactacgaggaacgc
ctggagaacgtctctcgcaaacaaggtgctcgcttcctggagtacagacctgagaccggc
tcctgggtatttgaggtggcccacttttccaagtatggcctgcaagactctgacgaagac
gaagacatccctccggctaaaacggaggcgaagaagatgaaaactgctgtcccggcggga
ctgcaacaaatcccactttcccaacagcaacagcagatggcgccacaagctcagagtaag
gcggtactggagcttctgagccgcgtgtcggagctggacagcgacatggcggatattacc
caggagcctccagcagacggagtgttgtgtgacgaggacgactgcgtgctggaggatgac
acaaggatggccctaagagcggcgacccctgctgagccggagcccatctctgcctccagt
cagatcgcctcctcgttaggaatcaacccacacactcttcagattatgaaggcgtccctg
tttgtcggtgaggacgactgcgacctgtttcacgagcagttcccaacgaaattctcggag
gaggtgtcgtctccttcgcggcttttactcggtaaatcccaggccaggctatcagtgggc
ggccttctgcagagcaagttcacctcggccggggggctgttttcgcagctgccagagctt
cctttcggagggagccctcagaagttgagtaagtcagcagtaccagaagcttcgtggccg
tcactgggcacctccatcgttttacctcctcctgcccctgagctcatgccgaggactgta
ggagcacgcagactgtgcggccccgtgcctctcgaaaactctgtcaccgtgggaaaaggc
cgtctgctgatggacgcggcgttgtacatgggccgctcgttcagggtgggatgggggcct
aactggacgctagtgcattgtgggaaccagctcagcacacctgcggagtcgaaggatcag
aacaaagatgccatgggcttcggcttcttgcccagacctagcaagaaccggcagatcgct
gaaagcccctttaaagtacatgtggagcaggtggtgggcatggagcccaaggtgactgcg
gagagcctggccatgtaccaccagccacttgagatcgggctcgagcacagcacattcagc
acggacgatgcctgccccttcgtccaaccggagaaaggagtgaatgctctgcacgagtac
gccaagtggatcgtggaggtcctgaagaagggcggagctggagacgctgtactcggtcac
tggcagcaagtatggactctgtgtgaggctctgtggggacggctcggagatcgggactcg
gagccggaggtcggcggaggttaccaagaccgacacgcgagaaggcacagtttctcccgc
tggctgtctgaaagcgctgcccaacgcatccaggaagaagtgtgccggaatcagacacgc
tgccacgtcgacgccatcttcagctacctgaccggccactgcatcagtgaggcttgcaga
ctggcccagaaaaatggagaccatcgtctgtccctgctgctgtcccaggctgcggggtct
cagttcagcagagatcttctggccctccagttagcagactggaaccgaatgcagacggac
tctttcatccaggaggagagactgcacattttcgccctactcgctggcaaacccgtttgg
gagacgacagactgctgtataaacgtgtgctcggagctggactggaagcgctgtttggct
gtgcatctgtggtacatgctgcctcctacggcctccgtcgcagactctctcgccaaatac
gaagccgcctttcagggatcggaagatggaagaaaatatgcctgcgctcctctcccgccc
tatatggatgatgtagagcaggaagctgtggaagagatggaggaaaccgaatctacaaaa
gcgctctatgacatctgtttccatctgcttaaactttacagtgacaagcactacagcctg
caccagctgctggaccccactacagtgactgcagatcagctggactacaggctaagttgg
cacctgtggaatgtgctacaagccctgaactacacccacctgtcactgccacgccagagt
ctcctccacactagctacgctgcccagctcgagagcgcgggcctgtgggagatggctgtt
tttgttctgctgcacatccctgactcattgcttcgagagcgtgctgtgcgggagatcctg
aaccagcactgtgccctggaggagactgacgagtccgcagagaaggaacgcttcctcact
gacaagctgctcatccccatgcagtggatccacgaagccaaggccacccgggcacgcagg
gacggagaccagcaccgtgaagcactgcacctcttcagggctggacactggaaccgctgc
caccggctcatcatccaaaacctggcttcagactgcatcgttaacgataatcatgagtat
ctcaaggagtttctggaaggcttggctgtgcctgagctcagcgttcagatacaggactgg
gacacgtccggacgcgtctatctggactacatccgcgttattcagagcctgaaaaccatt
cagaaggcggacagcccaggattccagctggagcggctacacaacaacgtgacctcactg
tgcagcaggattgagctccttccctgtttcaaagccaaagacagacttgcccagtcagaa
atggccaaacgtctggctaacatcctgcgtgcggtgctaagccttcagcagggtggagag
ggcgctccggatcctcgccgcatcccgctgtgccatctcgcaccccacatcggacgctta
cccatgcccgaggactacgctctggaagagctccgcagcctcacccagtcttatctacgc
gagtatgtcgtcagtcactga
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