KEGG   Ictalurus punctatus (channel catfish): 108279007
Entry
108279007         CDS       T04658                                 
Name
(RefSeq) RNA polymerase II elongation factor ELL2
  KO
K15183  RNA polymerase II elongation factor ELL
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03250  Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09125 Information processing in viruses
   03250 Viral life cycle - HIV-1
    108279007
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:ipu01009]
    108279007
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ipu03021]
    108279007
Protein phosphatases and associated proteins [BR:ipu01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     108279007
Transcription machinery [BR:ipu03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Super elongation complex (SEC)
     108279007
    Little elongation complex (LEC)
     108279007
SSDB
Motif
Pfam: ELL Occludin_ELL UBR1-like_wing
Other DBs
NCBI-GeneID: 108279007
NCBI-ProteinID: XP_017348366
Ensembl: ENSIPUG00000011420
UniProt: A0A2D0T0Q7
LinkDB
Position
18:complement(4987809..5011631)
AA seq 623 aa
MAALSEDGRYGLNCGRNTDRITVLHVKLTETAIRALENYRNCKNVPSSQPTIHFQGLQGR
IKIPKSDVSDGSHIFDFYLSNVGKDNPQGSFECIQQHVPSSGVPHLSSLGAIQDKITVCA
TNDSYQVTRERMTQAEEDTRKRGTKVIKPGGQFRGAKVQIRKPAPSAPDPVPERKRSTPM
NPANTIRKCLTNNPVSQRPYRERIIHLLALRSYKKLEVLARLQRDGISQKDRNSLGSTLQ
QVANLNPKDNSYSLKDFIYREVQRDWPGYSEDERVQLDRILARKLGLPADSLSSSSSPKE
PSSPQKRQPQGDFIDPLMSKKPRISHLSSRGASSSSDRRLPTETEEKRPAPPVNAACPGP
SSQPPVSHPPSGSNSNSPSTPEGRGTQDLPLDQSSTCGEETEPYAPRSITPSSNFLPASA
TSPAANSSKKPKKKSKKHKDKERERRAEDENARHREGPAEKEDRPRKRHRIEAGKHSPAN
VDSSSDADLHREDRTSKPELTELPTPVIPDYIAKYTAVVSMDQRQCYKDDFNGEYDEYRT
LHARVENITRRFTQLDAQCRRLLPGTKEYQEVHEEVLQEYKKVKQHNPNYHEEKQRCEYL
HNKLAHIKRLIADFDQRRAQSWR
NT seq 1872 nt   +upstreamnt  +downstreamnt
atggccgctctctccgaggacgggagatacggactcaattgcggccgcaataccgacaga
atcaccgttctgcacgtaaaacttaccgagacggccatacgagcgctagaaaactaccga
aactgtaagaatgtaccgtcctcacagccaacaatacatttccaaggactgcaagggcgc
atcaagattccaaagtcggacgtctcagatggatctcacatcttcgatttctacctgtcc
aatgtcggcaaggacaatcctcagggaagctttgaatgcattcagcagcatgtgcccagc
tccggggtcccccacttgtcctctctgggggcgatccaggacaaaatcacagtgtgcgcc
accaacgattcctaccaggtgaccagagagcgcatgacgcaggccgaggaggacacgcgc
aagaggggcaccaaggtcatcaaacctggagggcaattccgaggtgcaaaggtgcagatc
cgaaagccagctccgtctgcccccgacccggtccccgagaggaaacggtcgacccccatg
aacccagccaacaccatccgcaagtgccttaccaacaacccagtgtcccagcggccatac
cgggaacgcatcatccacctgctggctctgcgctcctacaagaagctggaagtcttagcc
aggctgcagcgagacgggatcagccaaaaggaccgcaattcgctggggagcaccttacag
caggttgccaatctgaacccaaaggacaactcgtactccttaaaggacttcatttaccgt
gaggtccagagagactggcccggctactctgaggacgagcgcgttcagctagaccggatc
ttggctcgtaaactgggcctgcctgcagattcactctcatccagcagttctccaaaagaa
ccatcatcaccacagaagcgccagcctcagggtgacttcatcgaccctctgatgtccaag
aaaccccgtatctcccacctcagcagccgaggagcttcgagctcgtcggatcgccgcctg
cctacagaaaccgaggagaagagaccggctcctccagtgaacgcagcctgcccgggccct
tcgtcccagcccccggtgtcccaccctccatccggctcgaactccaactcgcccagcacg
cccgagggccgcggaacccaggacctgcccctggaccagagctccacatgcggggaggag
acggaaccctacgcaccccgctccatcactcccagctccaactttctcccagcttctgcc
acatccccagcagccaacagtagcaaaaagcccaaaaagaagtcgaagaagcacaaagac
aaagagcgggagaggagagcggaggacgagaacgcacggcacagggagggaccggctgag
aaggaagacaggccgagaaagaggcaccgcatcgaggcaggaaaacactcgccagctaac
gtggacagctcttcagatgcagacctgcaccgagaagacagaacaagcaaacctgagctt
actgaacttcccacaccagtgatacctgattacatagctaaatacactgcggtagtgtct
atggatcagaggcagtgctacaaggatgactttaacggcgagtacgatgaatatcgcact
cttcacgctcgtgtggagaacatcacacggcgcttcacacagctggacgctcagtgcaga
cgcctgctacccggaaccaaagagtaccaggaggtgcacgaagaggtgcttcaagaatac
aagaaagtcaagcaacacaacccgaattaccacgaagagaagcagcgctgcgagtacctg
cacaacaagctggcccacatcaagaggctcattgctgactttgaccagcggagggcgcag
tcctggcgttaa

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