Ictalurus punctatus (channel catfish): 108279014
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Entry
108279014 CDS
T04658
Symbol
aff1
Name
(RefSeq) AF4/FMR2 family member 1
KO
K15184
AF4/FMR2 family member 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108279014 (aff1)
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Super elongation complex (SEC)
108279014 (aff1)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
AFF4_CHD
AF-4
AF4_int
Motif
Other DBs
NCBI-GeneID:
108279014
NCBI-ProteinID:
XP_053543683
UniProt:
A0A9F7RVA7
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Position
18:7314468..7370271
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AA seq
1103 aa
AA seq
DB search
MAAQSSVREELNVLRRKEWERRNQETLQDKELYQESTPLFGEPYKTNKGDELSSRIQRML
GNYEDGNNFQYNQFDGEPMAQPPSSSSYGRSGNPVHKDKTDPSFQSSSSYGSTKQGHSSH
SSSKPSKKFPILEISFPVQSKEGPGKSHQTKTGSWPDMRDYATLPPPVLPDLSPPAEPLS
PLHSSESEQDMDDDNGTNEHSLSPRCKSSSRRTVPSQRSEAQQKETSHLGGDAPIQASQT
FPLPLSSKPNLANSRKPMALVRPMDGPDQVNNESPNLKPSPDDYHGQSYENLSDLKNVGK
PNLPPLKIPSQSVEMLSNEVQRVEEILREMTHSWPPLLTAIQTPSTAEPSKFSFPNKESS
VHRGYQQPQKHSESPPKAPLSPVHQHPVACEDGSAAVLAPANGAGSGSSSDSESSSESES
DSESSDSGTDEMPPAPRSNTPPVKAEGLKDINWQLITWIKESQQSLNPQNQANVASKPKP
KPAASTKSQMHTRSAEDSKPKNKKHYNSSRTPPAQPEFSDANPEAKPAPVNQHTSHKPAS
NANPEAGTRKTVGDNRLGKSTKAQSSLHVESVEVTPRNKDATFTERPKVKTKTVHEKKSE
SRKSTKRSSSEKRDGKEAAAKPTTAVAEDKKEAEPVRPSSPLPKSSVTVTRAPSKSSKKS
RARSPKTDRKSKSSASKSTVDVPLTLVVKIQLSQLARVPQVPKATKTGTSAHVETPLKKP
SQEKEPGKAGKKRPADHTDLSVPKKKPKLEKDREGKASSSSQHSSVKTEAAARSREESDR
KSSKKVHTPAPHNPGQGRRAGEMEESGNSGSKHKKKCSIRAEHGKRDKKAPKSSTSAPDS
SASCGAPAAHRPLLKFDDKQYPVDYHMKEAKKLKHKADAMVDKMGKALSYLDAAMSFVES
GIAMETDPQTPKSAYTMFSDTVDLIRFILKLKNYVDPSAPASERDFLVLCMRCQALLQMA
MFRCKRESALKYSRTLTEYFKSSKTMQAPSPCISKSSSPRSPMPSPASSVISNPSGSGST
VSIPQLIQQMASSYINITALFLNAHETWEQAEELARTRTGLLSDLDKVLGHLSLTSSMPV
LVRYTRQGLHWLRLDTSNPCSGP
NT seq
3312 nt
NT seq
+upstream
nt +downstream
nt
atggctgctcagtctagcgtacgcgaagaactgaacgtcctgcggaggaaagaatgggag
cggaggaaccaggagaccctgcaggacaaggagctgtatcaggagagtacgccgctcttt
ggggagccttacaagacaaacaaaggcgatgaactgtccagccgcatccagaggatgctc
ggtaattacgaggatgggaacaacttccagtacaaccagtttgacggggaacccatggct
caacccccttcgtcatcgtcgtacggacgttcagggaaccccgtgcacaaggacaaaacg
gatccctcattccagagttcatcgtcgtacggaagcactaaacaaggccactcgagtcac
agctcgtctaagccttcgaagaagttcccgatcctggaaatctccttcccagtccagagc
aaagaaggtcccggcaaatcccatcaaacgaaaacaggctcctggcctgacatgagagac
tatgccaccttaccgcctcctgttcttccggacctttcaccgcctgcagaacctttgtcc
cctttacattccagcgaatcagaacaggacatggatgatgataacggtaccaacgagcac
tcgctttcccctcgctgcaaaagttcttccagaaggactgtcccgtctcagcgttcagag
gcccaacaaaaggaaacgtcccacctgggcggagacgccccaatccaggcttctcagacc
ttcccgcttccactgtcttccaagcccaacttggccaactctaggaagcccatggcgttg
gtccgacccatggatggacctgaccaggtcaacaacgagtccccgaatcttaaaccgtcg
cccgacgactatcacggacagtcttacgagaacttgtcggatctgaagaacgtaggcaag
ccgaaccttcctccgctaaagatcccgtcgcagtctgtagagatgctgtcaaatgaggtt
cagcgtgtggaggagattctcagagaaatgacccactcatggcctcctctgctaacggcc
attcaaaccccgagtacagccgagccatccaagttctcctttcctaacaaggagtccagt
gttcatcgtggataccagcagcctcaaaagcacagtgagtcaccaccgaaagctccgctg
tcacctgttcaccagcacccagttgcgtgtgaagatggcagtgccgctgtgttggcgcct
gccaacggagcggggtctgggagctccagtgactcagagagcagctccgagtctgaatcc
gacagcgagagcagcgacagcggcacagatgagatgccacctgctcctaggagtaacaca
ccaccagtgaaggccgaggggctgaaagacatcaactggcagttgatcacttggatcaag
gagagccagcagagcctgaaccctcagaaccaggcaaacgttgcgtcaaaacccaagccc
aaacctgcggccagcaccaaatcgcaaatgcacactcgctctgcggaggattccaaaccc
aaaaataagaaacactacaactcctcccgtactccccccgcccagcccgagttcagcgac
gccaatcctgaggccaagcccgcccctgttaaccaacacaccagccacaaacctgcttct
aacgccaatccggaagcaggaacccgaaaaacggtaggtgataaccgcctagggaagagc
accaaagcccagagcagcttgcacgtcgaaagcgtggaggtgactccccgcaacaaagat
gcaacgtttacggaaaggccaaaggtcaagacgaaaactgttcacgagaagaaatctgag
agcagaaaatcgaccaaacggtcatcttcggaaaaaagggacgggaaagaagcagctgcg
aagcctaccacagcggtggcggaggacaaaaaggaggcggagcctgttcgcccgtcctcc
ccgctacccaaaagcagcgtaactgtaactcgtgcgccctccaaaagctccaaaaagagc
cgggctcgctcaccgaagacggacaggaaatccaaatcctcggcatccaaatcgaccgtc
gacgttcctctcactttggtggtgaagatccagctcagtcagctggccagagtgccacag
gtacccaaagcaacgaagaccggaaccagcgctcatgtggagacccctttaaagaaaccg
agccaggagaaagaacctggtaaagcgggcaagaagagacctgctgatcacactgatctc
tccgtgccaaaaaagaagccgaaactggaaaaggacagagagggaaaagcgtcgtcttca
tctcagcacagctccgtcaaaacagaagcagccgcgaggagccgcgaggagtcagacagg
aagagcagcaagaaggtccacactcctgctcctcacaacccgggacagggacgccgcgct
ggagagatggaggagagtggcaactcgggcagcaagcacaagaagaagtgctcgatcaga
gcagagcatggcaagagagacaagaaagcaccaaagagcagcacatctgccccggattcg
tcggcttcctgtggagccccggcagcgcaccgacccctgctcaagtttgacgacaagcag
taccctgtggattatcatatgaaggaagccaaaaagctgaagcacaaagccgacgccatg
gtggataaaatgggtaaggccttgagttacctcgatgctgccatgtccttcgtagagagt
ggcatcgccatggagacagatccccagacgcccaagtcggcttacaccatgttctccgac
accgtagatctcatcagatttatcctgaagctgaagaactacgtagacccgtcagctcct
gcttcagagcgagacttcttagtcctgtgtatgcgatgtcaggccctcctgcagatggcg
atgtttcgctgtaaacgcgaatcggcgctgaagtattctcgcacactcaccgaatatttc
aagagctccaagacgatgcaggctccttccccctgcatctcaaagagctcgtccccgagg
tccccgatgccgtccccggcgagttcggtcatctccaatcccagcggcagcggaagcact
gtgtccattcctcagctcatccagcagatggcgtcatcgtacatcaacatcaccgctctc
ttcctcaacgctcacgagacatgggaacaggccgaggagctggcacgcacacgcaccggt
ctgttgagcgatctggacaaggtcctcggccacctgagtttgacctccagcatgccggtt
ctggtgcgttacactcgccaaggtctccactggctcagactggacacctcgaacccttgc
agcggcccgtga
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