KEGG   Ictalurus punctatus (channel catfish): 108279074
Entry
108279074         CDS       T04658                                 
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 1
  KO
K11984  U4/U6.U5 tri-snRNP-associated protein 1
Organism
ipu  Ictalurus punctatus (channel catfish)
Pathway
ipu03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ipu00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108279074
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ipu03041]
    108279074
   04121 Ubiquitin system [BR:ipu04121]
    108279074
Spliceosome [BR:ipu03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6.U5 tri-snRNP specific factors
    108279074
Ubiquitin system [BR:ipu04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    108279074
SSDB
Motif
Pfam: SART-1 HIND HA
Other DBs
NCBI-GeneID: 108279074
NCBI-ProteinID: XP_017348517
Ensembl: ENSIPUG00000021117
UniProt: A0A2D0T0R9
LinkDB
Position
18:13237186..13250907
AA seq 778 aa
MGSSKKHKEKDKDRDPEERHREHKKHRHKDRERDKEREKEKEKRKRSRSRDRSSRAAEKE
SRSRGEKSSGEPRVKKEKPDPSCEETEDAGPKSAAGDASLSIEETNKLRAKLGLKPLEMN
ESKKELGTKEEPLQAEVINPIQIRQQKEIREKLAALKEKRLLNQKLGKVKRLADDDPWLD
DTAAWVEKSRKLAKEKEMAEKRAKLLEEMDEEFGVSNLVEQEFAQSKQEAYSSRDLKGLT
VQHKMESFREGETVILTLEDKGVLEEKEDVLVNVNIVDKEKAEKNVELKKKKPEYKPYNE
EESVDDMVMFKQKSVLSKYDEEIEGEKKKSFQLSAGGYATGDRERELQAIRETLRNQAQS
LDMPALAVASEYYTPQEMVGFKKTKRRIKKIRKREKPLKADELFTDDTRSTDFGSRSRGR
GRKQVEETEEMEDSAKDAGSSKADTLQQSDDIRTADMDISDDDDFVPPEPETIEEDEAEL
ELQKQLEKQRKLKQKQLLKDSGEKVMEHLQVLERAGEDGVDDPDKKNNIVFNATSEFCRT
LGDIPTYGLSGNREDQEDIMDFEQKEERDGAGGSGSDMDDNVGWSTVNLDEEQKQPDFAT
ASTTILDEEPIVNSGLAAALLLCKNKGLLETQMQKVARVRAPKGALPNDNYCIEDKMAID
DKYSRREEYRGFTQDFKEKDGYKPDVKIEYVDESGRKLTPKEAFRQLSHRFHGKGSGKMK
TEKRMKKLEEEALLKKMSSSDTPLGTVALLQEKQKSQKTPYIVLSGSGKSMNANTITK
NT seq 2337 nt   +upstreamnt  +downstreamnt
atgggctcgtctaaaaaacataaagagaaggataaggaccgggacccggaggagcgccat
cgggaacacaaaaagcaccgacacaaggatcgcgaaagggataaagagcgagagaaagag
aaggagaagaggaagagatcccgctcccgggacaggagcagtcgggctgcggagaaagag
agcaggagcagaggggagaagagcagcggagagccgcgggtgaagaaagagaaaccagat
ccaagctgtgaagagactgaagatgcagggccgaaatcagcagctggtgatgcttcactc
agcatcgaagagaccaataagctaagggctaaactgggtctgaagccccttgagatgaat
gagtccaaaaaagaacttggcacaaaggaggagcctctgcaggctgaagtgatcaacccc
atacagatcagacagcagaaggagattcgggagaagctggctgctcttaaagagaaacgt
ctgctcaatcagaagctcggcaaagtaaagaggctcgcagatgacgatccgtggcttgat
gacactgcagcctgggtagagaagagtcgcaaacttgcgaaggagaaggagatggcagag
aagagggccaagcttctggaagagatggatgaagagtttggtgtcagcaacttggttgaa
caagagtttgcacaaagcaaacaggaggcttacagttcgagggatcttaaaggtcttacc
gtacagcacaaaatggaatcatttagagagggcgagacggtcattttgactctagaagac
aaaggtgttctggaggagaaggaggacgtgcttgtgaacgtcaacatagtggataaagag
aaagcagagaagaacgtggagcttaagaagaagaagcctgagtacaaaccttacaacgag
gaggagagcgtggacgacatggtcatgttcaagcaaaagtctgtcctgtcgaagtatgat
gaggagatagagggcgagaagaagaagagcttccagctgagtgctggtggctacgctaca
ggggaccgagaacgtgagctgcaggccatcagagagacgctgcgcaatcaggcccagtct
ctggacatgcctgctctagctgtggcctcggagtactacaccccacaggagatggtgggt
tttaagaaaaccaaacggcgtataaagaaaatcaggaagagggagaaacccctcaaggct
gatgagctcttcacagacgacactcgcagcacggatttcggctccaggtcacgaggccgt
ggtaggaaacaggtggaagaaaccgaagagatggaagactctgctaaggatgctggcagc
agtaaagcagacactctgcagcagtctgatgacatccggacagctgacatggacatcagt
gacgatgatgattttgttccaccggaacctgaaactatcgaagaggatgaggctgagctg
gagctacagaaacaactagagaaacagaggaagcttaaacagaagcagctgctgaaagac
tcaggggaaaaggtgatggaacacctgcaagtgctggagagagccggagaagatggtgtt
gatgatccggacaagaaaaacaacatagtctttaatgccacgtcagagttctgccgcacc
ctgggagacattcctacctacggcctgtcaggaaaccgggaggaccaggaggacatcatg
gactttgagcagaaggaagagcgagacggagctggaggctccggttcagacatggacgat
aacgtgggctggagcaccgtcaatctggatgaggagcagaagcagccggattttgccacc
gcttcaaccaccattctggacgaagagcccatcgttaactctggcctcgcagctgctttg
ctgctctgcaagaacaaagggctgttggagactcaaatgcagaaggtggctcgagtgcgc
gctcctaaaggagctctgccaaatgacaactactgcattgaagataagatggccattgat
gacaaatacagcaggagagaggaatacaggggcttcacacaggacttcaaggagaaagat
ggctacaagccagatgttaagattgaatacgtggatgagtctgggcgcaagcttactcct
aaagaggctttcagacagttatcccatcgtttccatggcaaaggatctggaaagatgaag
actgagaaaagaatgaaaaaactggaggaggaggcgctgctgaagaagatgagcagcagc
gacactcctctaggtactgtggccctgctgcaggagaaacagaagtcccagaaaactccc
tacattgtcctcagtggtagtgggaagagcatgaatgcaaataccattaccaagtag

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