Ictalurus punctatus (channel catfish): 108279077
Help
Entry
108279077 CDS
T04658
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
ipu
Ictalurus punctatus (channel catfish)
Pathway
ipu03082
ATP-dependent chromatin remodeling
ipu03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
ipu00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108279077
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
108279077
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ipu01009
]
108279077
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ipu03021
]
108279077
03036 Chromosome and associated proteins [BR:
ipu03036
]
108279077
Protein phosphatases and associated proteins [BR:
ipu01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
108279077
Transcription machinery [BR:
ipu03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108279077
SWI/SNF complex
108279077
Chromosome and associated proteins [BR:
ipu03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108279077
PBAF complex
108279077
SWI/SNF complex
108279077
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
108279077
NCBI-ProteinID:
XP_017348527
Ensembl:
ENSIPUG00000013824
UniProt:
A0A2D0T0S8
LinkDB
All DBs
Position
18:6066289..6076444
Genome browser
AA seq
393 aa
AA seq
DB search
MRRNMRSNMRSGLYCVCLLKMALSKTFGQKPIKFQLEEDGDFYMIGSEVGNYLRMFRGSL
YKRYPSLWRRLASVEERKKIAASSHDHGYTTLATSVTLLKASECEEIFEGNDEKYKAVSI
STEPPAYLREQKAKRNSQWVPTLPNSSHHLDAVPCSTTINRNRMGRDKKRTFPLCFDDHD
PAVIHENASQTEVLVPIRLDMEIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLT
FVPAIASAIRQQIESYPTDSILDEQTDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPET
FALKLCSELGLGGEFVTTIAYSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPL
LETLTDAEMEKKIRDQDRNTRRMRRLANTAPAW
NT seq
1182 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagaaacatgcgcagtaacatgcgcagtgggctgtattgtgtctgtcttctaaag
atggcgttgagtaaaacattcggtcaaaagccgataaaatttcaactcgaagaagatggc
gatttttacatgataggctctgaggttggaaattatttgcgtatgttcagaggttcgctg
tacaaaaggtacccatcattgtggcgcagactcgcttcggtagaggagaggaaaaagatc
gccgcatcgtcacacgatcatggttacacaactttagccaccagtgtgactctgctgaag
gcgtctgagtgtgaagagatctttgagggcaatgatgagaagtacaaggcagtgtccatc
agcacagaacctccagcctacctcagggaacagaaggccaagaggaacagtcagtgggtc
cccacactccccaacagttcacaccacctggacgctgtgccttgttccaccaccatcaac
cgaaaccgcatgggacgcgacaagaaaaggaccttccccctgtgtttcgatgaccacgac
ccagcggtgatccatgaaaacgcctcacagacagaggttctggttcccatccgattggac
atggagatagacggccagaagctccgagacgccttcacctggaatatgaacgagaagctg
atgacgccggagatgtttgcagagatattgtgtgacgatttggacctgaacccactgaca
ttcgtcccagccatcgcctccgccatccggcagcagatagagtcctaccctactgacagc
atcctagacgaacagaccgatcagagagtcatcatcaagctgaacatacacgtgggaaac
atttccctggtggaccagttcgagtgggacatgtccgagaaggagaactctccagaaacg
tttgcgctgaagctgtgctctgagctcggtctcggaggagagttcgtcaccaccatcgcc
tacagcatccgcggccagctcagctggcatcagaggacgtacgccttcagtgagaacccc
ttgccgactgtagagattgccattcggaacacgggcgatgccgatcagtggtgccccctg
ctggaaacgctgacagatgcagagatggaaaagaagatcagagatcaggacagaaacaca
aggcgcatgcggcgacttgccaacaccgcccccgcctggtag
DBGET
integrated database retrieval system
